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AT4G01470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24492334 (2014): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : tonoplast intrinsic protein 1;3
Curator
Summary (TAIR10)
Encodes AtTIP1;3, functions as water and urea channels in pollen.
Computational
Description (TAIR10)
tonoplast intrinsic protein 1;3 (TIP1;3); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: transport, urea transport, water transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: gamma tonoplast intrinsic protein (TAIR:AT2G36830.1); Has 10761 Blast hits to 10728 proteins in 2135 species: Archae - 83; Bacteria - 5069; Metazoa - 1488; Fungi - 435; Plants - 2488; Viruses - 0; Other Eukaryotes - 1198 (source: NCBI BLink).
Protein Annotations
BioGrid:13342eggNOG:COG0580eggNOG:KOG0223EMBL:AF096370
EMBL:AL161492EMBL:CP002687EMBL:DQ446793EMBL:DQ653172
EnsemblPlants:AT4G01470EnsemblPlants:AT4G01470.1entrez:828051Gene3D:1.20.1080.10
GeneID:828051Genevisible:O82598GO:GO:0006833GO:GO:0009705
GO:GO:0015204GO:GO:0015250GO:GO:0015254GO:GO:0015793
GO:GO:0015840GO:GO:0016021GO:GO:0034220GO:GO:0042807
GO:GO:0071918Gramene:AT4G01470.1hmmpanther:PTHR19139hmmpanther:PTHR19139:SF151
HOGENOM:HOG000288286InParanoid:O82598InterPro:IPR000425InterPro:IPR022357
InterPro:IPR023271KEGG:ath:AT4G01470KO:K09873ncoils:Coil
OMA:MAYGKLTPANTHER:PTHR19139PaxDb:O82598Pfam:O82598
Pfam:PF00230PhylomeDB:O82598PIR:T01947PRIDE:O82598
PRINTS:PR00783PRO:PR:O82598PROSITE:PS00221ProteinModelPortal:O82598
Proteomes:UP000006548Reactome:R-ATH-1237044Reactome:R-ATH-1247673Reactome:R-ATH-432040
Reactome:R-ATH-432047RefSeq:NP_192056.1scanprosite:PS00221SMR:O82598
STRING:3702.AT4G01470.1SUPFAM:SSF81338TAIR:AT4G01470tair10-symbols:ATTIP1.3
tair10-symbols:GAMMA-TIP3tair10-symbols:TIP1;3TCDB:1.A.8.10.6TMHMM:TMhelix
UniGene:At.65315UniProt:O82598
Coordinates (TAIR10) chr4:-:625092..625850
Molecular Weight (calculated) 25915.60 Da
IEP (calculated) 5.51
GRAVY (calculated) 0.83
Length 252 amino acids
Sequence (TAIR10)
(BLAST)
001: MPINRIAIGT PGEASRPDAI RAAFAEFFSM VIFVFAGQGS GMAYGKLTGD GPATPAGLVA ASLSHAFALF VAVSVGANVS GGHVNPAVTF GAFIGGNITL
101: LRAILYWIAQ LLGAVVACLL LKVSTGGMET AAFSLSYGVT PWNAVVFEIV MTFGLVYTVY ATAVDPKKGD IGIIAPLAIG LIVGANILVG GAFDGASMNP
201: AVSFGPAVVS WIWTNHWVYW VGPFIGAAIA AIVYDTIFIG SNGHEPLPSN DF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)