suba logo
AT3G26520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19922653 (2009): endoplasmic reticulum
  • PMID:19922653 (2009): plant-type vacuole plant-type vacuole membrane
  • PMID:16236160 (2005): peroxisome
  • PMID:14576283 (2003): endoplasmic reticulum
  • PMID:14576283 (2003): plant-type vacuole
  • PMID:10737809 (2000): peroxisome
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24344820 (2014): Golgi trans-Golgi network
  • PMID:24124904 (2013): plastid
  • PMID:24030099 (2013): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plant-type vacuole
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15574830 (2004): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15060130 (2004): plasma membrane
  • PMID:12678916 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tonoplast intrinsic protein 2
Curator
Summary (TAIR10)
gamma tonoplast intrinsic protein 2 (TIP2). expressed throughout the plant and transcript level is increased upon NaCl or ABA treatments. NaCl stress-sensitive yeast mutant strains exhibit more resistance to salt when expressing this protein.
Computational
Description (TAIR10)
tonoplast intrinsic protein 2 (TIP2); FUNCTIONS IN: water channel activity; INVOLVED IN: response to salt stress, transport, defense response to bacterium, hydrogen peroxide transmembrane transport, water homeostasis; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: gamma tonoplast intrinsic protein (TAIR:AT2G36830.1); Has 10870 Blast hits to 10853 proteins in 2179 species: Archae - 81; Bacteria - 5139; Metazoa - 1484; Fungi - 429; Plants - 2489; Viruses - 0; Other Eukaryotes - 1248 (source: NCBI BLink).
Protein Annotations
BioGrid:7590eggNOG:COG0580eggNOG:KOG0223EMBL:AB028611
EMBL:AF004393EMBL:AF057137EMBL:AF419613EMBL:AF428341
EMBL:AY079114EMBL:CP002686EMBL:Z18111EnsemblPlants:AT3G26520
EnsemblPlants:AT3G26520.1entrez:822259ExpressionAtlas:Q41963Gene3D:1.20.1080.10
GeneID:822259Genevisible:Q41963GO:GO:0005773GO:GO:0005774
GO:GO:0005783GO:GO:0005794GO:GO:0005886GO:GO:0006833
GO:GO:0009507GO:GO:0015250GO:GO:0016020GO:GO:0016021
GO:GO:0030104GO:GO:0042742GO:GO:0043674GO:GO:0080170
Gramene:AT3G26520.1hmmpanther:PTHR19139hmmpanther:PTHR19139:SF52HOGENOM:HOG000288286
InterPro:IPR000425InterPro:IPR022357InterPro:IPR023271KEGG:ath:AT3G26520
KO:K09873OMA:SHTHEQIPANTHER:PTHR19139PaxDb:Q41963
Pfam:PF00230Pfam:Q41963PhylomeDB:Q41963PIR:T51819
PRIDE:Q41963PRINTS:PR00783PRO:PR:Q41963PROSITE:PS00221
ProteinModelPortal:Q41963Proteomes:UP000006548Reactome:R-ATH-1237044Reactome:R-ATH-1247673
Reactome:R-ATH-432040Reactome:R-ATH-432047RefSeq:NP_189283.1scanprosite:PS00221
SMR:Q41963STRING:3702.AT3G26520.1SUPFAM:SSF81338TAIR:AT3G26520
tair10-symbols:GAMMA-TIP2tair10-symbols:SITIPtair10-symbols:TIP1;2tair10-symbols:TIP2
TCDB:1.A.8.10.9TMHMM:TMhelixUniGene:At.23902UniGene:At.27797
UniGene:At.68084UniGene:At.71055UniProt:C0SVC9UniProt:Q41963
Coordinates (TAIR10) chr3:-:9722770..9723703
Molecular Weight (calculated) 25850.30 Da
IEP (calculated) 4.72
GRAVY (calculated) 0.79
Length 253 amino acids
Sequence (TAIR10)
(BLAST)
001: MPTRNIAIGG VQEEVYHPNA LRAALAEFIS TLIFVFAGSG SGIAFNKITD NGATTPSGLV AAALAHAFGL FVAVSVGANI SGGHVNPAVT FGVLLGGNIT
101: LLRGILYWIA QLLGSVAACF LLSFATGGEP IPAFGLSAGV GSLNALVFEI VMTFGLVYTV YATAVDPKNG SLGTIAPIAI GFIVGANILA GGAFSGASMN
201: PAVAFGPAVV SWTWTNHWVY WAGPLIGGGL AGIIYDFVFI DENAHEQLPT TDY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)