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AT5G44670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.715
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF23)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Domain of unknown function (DUF23); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT4G20170.1); Has 204 Blast hits to 204 proteins in 35 species: Archae - 0; Bacteria - 27; Metazoa - 39; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
EC:2.4.1.-eggNOG:ENOG410Z7P2eggNOG:KOG4735EMBL:AB024024
EMBL:AF361577EMBL:BT002232EMBL:CP002688EMBL:KJ138650
EnsemblPlants:AT5G44670EnsemblPlants:AT5G44670.1entrez:834496GeneID:834496
GO:GO:0000139GO:GO:0005737GO:GO:0005773GO:GO:0016021
GO:GO:0016757GO:GO:0042546GO:GO:0071555Gramene:AT5G44670.1
hmmpanther:PTHR21461hmmpanther:PTHR21461:SF12HOGENOM:HOG000241963InterPro:IPR008166
KEGG:ath:AT5G44670OMA:TFEIRTIPaxDb:Q9LTZ9Pfam:PF01697
PhylomeDB:Q9LTZ9Proteomes:UP000006548RefSeq:NP_199280.1STRING:3702.AT5G44670.1
TAIR:AT5G44670TMHMM:TMhelixUniGene:At.43459UniProt:Q9LTZ9
Coordinates (TAIR10) chr5:-:18019209..18021266
Molecular Weight (calculated) 59958.90 Da
IEP (calculated) 9.11
GRAVY (calculated) -0.32
Length 519 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKERDQNTK DKNLLICFLW NFSAELKLAL MALLVLCTLA TLLPFLPSSF SISASELRFC ISRIAVNSTS VNFTTVVEKP VLDNAVKLTE KPVLDNGVTK
101: QPLTEEKVLN NGVIKRTFTG YGWAAYNFVL MNAYRGGVNT FAVIGLSSKP LHVYSHPTYR CEWIPLNQSD NRILTDGTKI LTDWGYGRVY TTVVVNCTFP
201: SNTVINPKNT GGTLLLHATT GDTDRNITDS IPVLTETPNT VDFALYESNL RRREKYDYLY CGSSLYGNLS PQRIREWIAY HVRFFGERSH FVLHDAGGIT
301: EEVFEVLKPW IELGRVTVHD IREQERFDGY YHNQFMVVND CLHRYRFMAK WMFFFDVDEF IYVPAKSSIS SVMVSLEEYS QFTIEQMPMS SQLCYDGDGP
401: ARTYRKWGFE KLAYRDVKKV PRRDRKYAVQ PRNVFATGVH MSQHLQGKTY HRAEGKIRYF HYHGSISQRR EPCRHLYNGT RIVHENNPYV LDTTMRDIGL
501: AVKTFEIRTI GDRLLRTRQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)