AT5G62220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glycosyltransferase 18 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
glycosyltransferase 18 (GT18); FUNCTIONS IN: catalytic activity; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT2G20370.1); Has 691 Blast hits to 690 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 667; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24988456..24990009 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59648.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.42 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||
| Length | 517 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLPVSNPSSP EHLLKKSRTP DSTTSIDRKN SFNSLHSVGN RSSYIAASRS HCTWLILSLL SLQLILFLTL RSIPFPHRHI PENFPSPAAV VTTTVTTTVI 101: SAASSNPPLS SSSSDERCDS GRVFVYDMPK IFNEVILQQC DNLNPWSSRC DALSNDGFGQ EATSLSNVIP KDLVQSWFWT DQFVTEIIFH NRILNHRCRT 201: LDPESATAFY IPFYAGLAVG QYLWSNYAAA DRDRHCKMMT QWVKNQPYWN RSNGWDHFIT MGRITWDFRR SKDEDWGSNC IYIPGMRNIT RLLIERNSWD 301: HFDVGVPYPT GFHPRSDSDV VNWQDFVRNR RRETLFCFAG APRAGIVNDF RGLLLRHCEE SRGKCRTVDC TVGKCSNGSS AILETFLGSD FCLQPRGDSF 401: TRRSIFDCML AGSIPVFFWR RSAYMQYQWF LPDKPDSYSV FIDRNEVTNG TTSIKEVLER YSKEDVRKMR ERVIDLIPNL VYAKSPNGLE TFKDAFDVAI 501: DGVFRRFKEQ EKWYKWR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)