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AT3G53000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.656
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phloem protein 2-A15
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
phloem protein 2-A15 (PP2-A15); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: phloem protein 2-A12 (TAIR:AT1G12710.1); Has 510 Blast hits to 504 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 510; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGDJeggNOG:ENOG410YE99EMBL:AL132969EMBL:BX823868
EMBL:CP002686EnsemblPlants:AT3G53000EnsemblPlants:AT3G53000.1entrez:824466
GeneID:824466Genevisible:Q9LF92GO:GO:0030246Gramene:AT3G53000.1
hmmpanther:PTHR31960hmmpanther:PTHR31960:SF7HOGENOM:HOG000239667InParanoid:Q9LF92
InterPro:IPR001810InterPro:IPR025886KEGG:ath:AT3G53000OMA:SCEYYLD
PaxDb:Q9LF92Pfam:PF14299Pfam:Q9LF92Pfscan:PS50181
PhylomeDB:Q9LF92PIR:T47557PRIDE:Q9LF92PRO:PR:Q9LF92
PROSITE:PS50181ProteinModelPortal:Q9LF92Proteomes:UP000006548RefSeq:NP_190868.1
SMART:SM00256STRING:3702.AT3G53000.1SUPFAM:SSF81383TAIR:AT3G53000
tair10-symbols:AtPP2-A15tair10-symbols:PP2-A15UniGene:At.50273UniProt:Q9LF92
Coordinates (TAIR10) chr3:+:19654278..19655801
Molecular Weight (calculated) 34198.70 Da
IEP (calculated) 6.60
GRAVY (calculated) -0.36
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSLSNLND GTNGLAMGPG LGDIPESCVA CVFMYLTPPE ICNLAGLNRS FRGAASSDSV WEKKLPENYQ DLLDLLPPER YHSLSKKDIF AVLSRPIPFD
101: DDNKEVWIDR VTGRVCMAIS ARGMSITGIE DRRYWNWIPT EESRFHVVAY LQQIWWFEVD GTVRFHLPPG VYSLSFRIHL GRFTKRLGRR VCHFELTHGW
201: DLKPVRFSLS TSDGQEASCE YYLDDVERNE ALGKHKRGYW IEYRVGEFIV NGSEPSTEIQ WSMKQIDCTH SKGGLCVDSV FINPIGDVKE HKRKAVLKEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)