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AT4G30240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.793
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Syntaxin/t-SNARE family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Syntaxin/t-SNARE family protein; INVOLVED IN: Golgi vesicle transport, vesicle-mediated transport; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: t-SNARE (InterPro:IPR010989), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT2G18860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYWReggNOG:ENOG410YID8EMBL:AF428456EMBL:AY133578
EMBL:CP002687EnsemblPlants:AT4G30240EnsemblPlants:AT4G30240.1entrez:829147
GeneID:829147GO:GO:0005622GO:GO:0016021GO:GO:0048193
Gramene:AT4G30240.1hmmpanther:PTHR34949hmmpanther:PTHR34949:SF1InterPro:IPR010989
InterPro:IPR015260KEGG:ath:AT4G30240ncoils:CoilOMA:SAYRLWF
Pfam:PF09177PhylomeDB:Q944G8Proteomes:UP000006548RefSeq:NP_567842.1
SMR:Q944G8SUPFAM:SSF47661TAIR:AT4G30240TMHMM:TMhelix
UniGene:At.26251UniProt:Q944G8
Coordinates (TAIR10) chr4:-:14808359..14809745
Molecular Weight (calculated) 34418.60 Da
IEP (calculated) 5.18
GRAVY (calculated) -0.57
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ
101: IYQVESTLLE SLSENGKQPL RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD SPDCVIDIDD IGSPESADKK
201: GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)