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AT4G36945.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31541795 (2020): plasma membrane
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24030099 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLC-like phosphodiesterases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling pathway, lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT3G19310.1); Has 486 Blast hits to 483 proteins in 111 species: Archae - 0; Bacteria - 90; Metazoa - 8; Fungi - 169; Plants - 156; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIFReggNOG:ENOG410ZQG3EMBL:CP002687EnsemblPlants:AT4G36945
EnsemblPlants:AT4G36945.1entrez:5008186Gene3D:3.20.20.190GeneID:5008186
GO:GO:0005886GO:GO:0006629GO:GO:0008081Gramene:AT4G36945.1
hmmpanther:PTHR13593hmmpanther:PTHR13593:SF52InParanoid:F4JQJ7InterPro:IPR000909
InterPro:IPR017946KEGG:ath:AT4G36945OMA:IGETCGSPaxDb:F4JQJ7
Pfscan:PS50007PRIDE:F4JQJ7PROSITE:PS50007ProteinModelPortal:F4JQJ7
Proteomes:UP000006548RefSeq:NP_001078503.4SUPFAM:SSF51695TAIR:AT4G36945
UniGene:At.31285UniGene:At.47988UniProt:F4JQJ7
Coordinates (TAIR10) chr4:-:17420098..17422047
Molecular Weight (calculated) 44333.90 Da
IEP (calculated) 4.76
GRAVY (calculated) -0.29
Length 408 amino acids
Sequence (TAIR10)
(BLAST)
001: MERFNFFNLM IIALCLSSFV HSLEMGETCS STSECDAGLS CQSCPANGNT GSTCTRIQPL NPTSKVNGLP FNKYSWLTTH NSYAITGANS ATGSFLVSPK
101: NQEDSITNQL KNGVRGIMLD TYDFQNDIWL CHSTGGTCFN FTAFQPAINA LKEINDFLES NLSEIVTIIL EDYVKSQMGL TNVFNASGLS KFLLPISRMP
201: KDGTDWPTVD DMVKQNQRLV VFTSKKDKEA SEGLAYQWNY MVENQYGNDG MKDGSCSSRS ESSSLDTMSR SLVFQNYFET SPNSTQACAD NSSPLIEMMR
301: TCHEAAGKRW PNFIAVDFYQ RSDSGGAAEA VDEANGRLTC GCDSLVYCKS NAPFGTCDAP PPKSSPSPVS GGKDTSRKPR NLPAGNADST AIGLSSLVLI
401: SAATLLLW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)