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AT1G30620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.
Computational
Description (TAIR10)
MURUS 4 (MUR4); FUNCTIONS IN: UDP-arabinose 4-epimerase activity, catalytic activity; INVOLVED IN: plant-type cell wall biogenesis, arabinose biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G20460.1); Has 42820 Blast hits to 42812 proteins in 2971 species: Archae - 775; Bacteria - 25948; Metazoa - 715; Fungi - 615; Plants - 1158; Viruses - 34; Other Eukaryotes - 13575 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1087eggNOG:KOG1371EMBL:AK317172EnsemblPlants:AT1G30620
EnsemblPlants:AT1G30620.1EnsemblPlants:AT1G30620.2entrez:839942ExpressionAtlas:B9DGJ1
Gene3D:3.40.50.720GeneID:839942GO:GO:0003978GO:GO:0006012
Gramene:AT1G30620.1Gramene:AT1G30620.2gramene_pathway:5.1.3.5gramene_pathway:PWY-63
gramene_plant_reactome:1119574gramene_plant_reactome:6875778hmmpanther:PTHR10366hmmpanther:PTHR10366:SF326
InterPro:IPR005886InterPro:IPR016040iPTMnet:B9DGJ1KEGG:00052+5.1.3.2
KEGG:00520+5.1.3.2KEGG:ath:AT1G30620KO:K12448OMA:HTNLKES
PaxDb:B9DGJ1Pfam:PF16363Pfam:Q9SA77PhylomeDB:B9DGJ1
PRIDE:B9DGJ1ProteinModelPortal:B9DGJ1RefSeq:NP_001031118.1RefSeq:NP_174350.2
SMR:B9DGJ1STRING:3702.AT1G30620.1SUPFAM:SSF51735TAIR:AT1G30620
tair10-symbols:HSR8tair10-symbols:MUR4tair10-symbols:UXE1TIGRfam:TIGR01179
TIGRFAMs:TIGR01179UniGene:At.20201unipathway:UPA00214UniProt:B9DGJ1
UniProt:Q9SA77
Coordinates (TAIR10) chr1:+:10855496..10857970
Molecular Weight (calculated) 46313.70 Da
IEP (calculated) 9.42
GRAVY (calculated) -0.26
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSFGRARSQ GRQNRSMSLG GLDYADPKKK NNYLGKILLT ASLTALCIFM LKQSPTFNTP SVFSRHEPGV THVLVTGGAG YIGSHAALRL LKESYRVTIV
101: DNLSRGNLAA VRILQELFPE PGRLQFIYAD LGDAKAVNKI FTENAFDAVM HFAAVAYVGE STQFPLKYYH NITSNTLVVL ETMAAHGVKT LIYSSTCATY
201: GEPDIMPITE ETPQVPINPY GKAKKMAEDI ILDFSKNSDM AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ARGIMPGLQI KGTDYKTADG
301: TCVRDYIDVT DLVDAHVKAL QKAKPRKVGI YNVGTGKGSS VKEFVEACKK ATGVEIKIDY LPRRAGDYAE VYSDPSKIRK ELNWTAKHTN LKESLETAWR
401: WQKLHRNGYG LTTSSVSVY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)