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AT2G37940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Arabidopsis Inositol phosphorylceramide synthase 2
Curator
Summary (TAIR10)
I
Computational
Description (TAIR10)
Arabidopsis Inositol phosphorylceramide synthase 2 (AtIPCS2); BEST Arabidopsis thaliana protein match is: Arabidopsis Inositol phosphorylceramide synthase 1 (TAIR:AT3G54020.1); Has 438 Blast hits to 435 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 250; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G37940-MONOMERBioCyc:MetaCyc:AT2G37940-MONOMERBioGrid:3715EC:2.7.8.-
eggNOG:ENOG410XNSCeggNOG:KOG3058EMBL:AF325083EMBL:AK317636
EMBL:AY058059EMBL:AY090297EMBL:CP002685EnsemblPlants:AT2G37940
EnsemblPlants:AT2G37940.1entrez:818371GeneID:818371Genevisible:Q9SH93
GO:GO:0005802GO:GO:0006952GO:GO:0016021GO:GO:0030148
GO:GO:0045140Gramene:AT2G37940.1gramene_pathway:2.7.7.-gramene_pathway:PWY-5129
hmmpanther:PTHR21290hmmpanther:PTHR21290:SF29HOGENOM:HOG000005733InParanoid:Q9SH93
InterPro:IPR025749iPTMnet:Q9SH93KEGG:ath:AT2G37940OMA:AEWRPRT
PaxDb:Q9SH93Pfam:PF14360Pfam:Q9SH93PhylomeDB:Q9SH93
PIR:A84799PRIDE:Q9SH93PRO:PR:Q9SH93Proteomes:UP000006548
RefSeq:NP_565875.1STRING:3702.AT2G37940.1TAIR:AT2G37940tair10-symbols:AtIPCS2
TMHMM:TMhelixUniGene:At.14635UniProt:Q9SH93
Coordinates (TAIR10) chr2:+:15877169..15879411
Molecular Weight (calculated) 34997.90 Da
IEP (calculated) 9.64
GRAVY (calculated) 0.11
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLYIRRESS KLWKRFCSEI STEIGLLAEN WKYLLAGLIC QYIHGLAAKG VHYIHRPGPT LQDLGFFLLP ELGQERSYIS ETVFTSVFLS FFLWTFHPFI
101: LKTKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSKVSR LPWPKSALEV LEINPHGVMY GCGDLIFSSH MIFTLVFVRT YQKYGTKRFI
201: KLFGWLTAIV QSLLIIASRK HYSVDVVVAW YTVNLVVFCL DKKLPELPDR TAVLLPVISK DRTKEENHKL LNGNGVDPAD WRPRAQVNGK IDSNGVHTDN
301: TMNGA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)