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AT1G17290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22540835 (2012): mitochondrion
  • PMID:22215637 (2012): plasma membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21433285 (2011): plasma membrane
  • PMID:21311031 (2011): mitochondrion
  • PMID:21296373 (2011): mitochondrion
  • PMID:18385124 (2008): mitochondrion
  • PMID:17137349 (2006): mitochondrion
  • PMID:15574830 (2004): plasma membrane
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:11743115 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : alanine aminotransferas
Curator
Summary (TAIR10)
Encodes for alanine aminotransferase (ALAAT1), involved in alanine catabolism during plants recovery from hypoxia
Computational
Description (TAIR10)
alanine aminotransferas (AlaAT1); FUNCTIONS IN: L-alanine:2-oxoglutarate aminotransferase activity, ATP binding; INVOLVED IN: response to cadmium ion, response to hypoxia, L-alanine catabolic process, by transamination; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: alanine aminotransferase 2 (TAIR:AT1G72330.1); Has 28241 Blast hits to 28232 proteins in 2888 species: Archae - 752; Bacteria - 19527; Metazoa - 637; Fungi - 692; Plants - 1303; Viruses - 0; Other Eukaryotes - 5330 (source: NCBI BLink).
Protein Annotations
EC:2.6.1.-EC:2.6.1.2eggNOG:COG0436eggNOG:KOG0258
EMBL:AC026479EMBL:AF275372EMBL:AK221072EMBL:AY039970
EMBL:CP002684EnsemblPlants:AT1G17290EnsemblPlants:AT1G17290.1entrez:838301
Gene3D:3.40.640.10Gene3D:3.90.1150.10GeneID:838301Genevisible:F4I7I0
GO:GO:0001666GO:GO:0004021GO:GO:0005524GO:GO:0005739
GO:GO:0009058GO:GO:0009507GO:GO:0019481GO:GO:0030170
GO:GO:0046686Gramene:AT1G17290.1gramene_pathway:2.6.1.2gramene_pathway:ALANINE-DEG3-PWY
gramene_pathway:ALANINE-SYN2-PWYhmmpanther:PTHR11751hmmpanther:PTHR11751:SF369HOGENOM:HOG000215020
InParanoid:F4I7I0IntAct:F4I7I0InterPro:IPR004839InterPro:IPR015421
InterPro:IPR015422InterPro:IPR015424iPTMnet:F4I7I0KEGG:ath:AT1G17290
KO:K00814ncoils:CoilOMA:FHAKFTLPaxDb:F4I7I0
Pfam:F4I7I0Pfam:PF00155PIR:D86309PRIDE:F4I7I0
PRO:PR:F4I7I0ProMEX:F4I7I0ProteinModelPortal:F4I7I0Proteomes:UP000006548
Reactome:R-ATH-70614RefSeq:NP_173173.3SMR:F4I7I0STRING:3702.AT1G17290.1
SUPFAM:SSF53383SwissPalm:F4I7I0TAIR:AT1G17290tair10-symbols:AlaAT1
UniGene:At.23768UniPathway:UPA00322UniPathway:UPA00528UniProt:F4I7I0
Coordinates (TAIR10) chr1:+:5922771..5926093
Molecular Weight (calculated) 59824.30 Da
IEP (calculated) 6.38
GRAVY (calculated) -0.25
Length 543 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRFVIGQAK NLIDQSRRRQ LHHHKNLSFV SLIPPFSAPS DSSSRHLSSS SSSDMSASDS SSSLPVTLDT INPKVIKCEY AVRGEIVNIA QKLQEDLKTN
101: KDAYPFDEII YCNIGNPQSL GQQPITFFRE VLALCSYTAL LDESATHGLF SSDSIERAWK ILDQIPGRAT GAYSHSQGIK GLRDAIADGI EARDGFPADP
201: NDIFMTDGAS PGVHMMMQLL ITSEKDGILC PIPQYPLYSA SIALHGGTLV PYYLDEASGW GLEISELKKQ LEDARSKGIT VRALAVINPG NPTGQVLSEE
301: NQRDVVKFCK QEGLVLLADE VYQENVYVPD KKFHSFKKVA RSMGYGEKDL ALVSFQSVSK GYYGECGKRG GYMEVTGFTS DVREQIYKMA SVNLCSNISG
401: QILASLIMSP PKPGDDSYES YIAEKDGILS SLARRAKTLE EALNKLEGVT CNRAEGAMYL FPCLHLPQKA IAAAEAEKTA PDNFYCKRLL KATGIVVVPG
501: SGFRQVPGTW HFRCTILPQE DKIPAIVDRL TAFHQSFMDE FRD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)