AT5G09630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : LisH/CRA/RING-U-box domains-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LisH/CRA/RING-U-box domains-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT2G22690.2); Has 826 Blast hits to 826 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 373; Fungi - 219; Plants - 140; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2986016..2987176 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44428.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.29 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 386 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDVTGTVTVR DAFDRVSKKQ KLYHSVTQDV IDLVCDGIQD TLTRIQLGND DGVEPESVLT ELRRKLDALL PIIQLQKSHK ETKWSLSKLV KLLEVSYHPD 101: ISLACFSVDF DINLVNKILI HHCYREGLFD VGDCLVKEAG REEETEVRSQ FLEFHQIVDS LKLRNIEPAM RWIFANRGKL KQKSSKLEFK LLSLKYCDIL 201: REGKSDDALE YARTHFTQYP LHFKEIQKLI TCLLWIGNFE KSPYAEIVSP SCWDKVTKEL IMEYHHLLDQ PINSPLKVAL SAGYESLPSL LKLVHLMALT 301: KQEWQAMKQL PVPLELGNEY KFHSAFVCPV SRDQSSEENP PMQLPCGHVI SKQSMMRLSK NCAFRTFKCP YCPAETLASA CRQLYF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)