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AT3G16740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.548
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G18780.1); Has 1538 Blast hits to 1469 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1536; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:6260eggNOG:ENOG410JSFWeggNOG:ENOG41108UJEMBL:AB022217
EMBL:AK227738EMBL:BT004826EMBL:CP002686EnsemblPlants:AT3G16740
EnsemblPlants:AT3G16740.1entrez:820926GeneID:820926Genevisible:Q9LUQ9
GO:GO:0005634GO:GO:0016567Gramene:AT3G16740.1hmmpanther:PTHR32133
hmmpanther:PTHR32133:SF120HOGENOM:HOG000112505InParanoid:Q9LUQ9IntAct:Q9LUQ9
InterPro:IPR001810InterPro:IPR006527InterPro:IPR017451KEGG:ath:AT3G16740
OMA:IREFEIYPaxDb:Q9LUQ9Pfam:PF00646Pfam:PF07734
Pfam:Q9LUQ9Pfscan:PS50181PhylomeDB:Q9LUQ9PRIDE:Q9LUQ9
PRO:PR:Q9LUQ9PROSITE:PS50181ProteinModelPortal:Q9LUQ9Proteomes:UP000006548
RefSeq:NP_566558.1SMART:SM00256STRING:3702.AT3G16740.1SUPFAM:SSF81383
TAIR:AT3G16740TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.43886
UniPathway:UPA00143UniProt:Q9LUQ9
Coordinates (TAIR10) chr3:+:5699476..5700651
Molecular Weight (calculated) 45550.30 Da
IEP (calculated) 9.83
GRAVY (calculated) -0.23
Length 391 amino acids
Sequence (TAIR10)
(BLAST)
001: MVQISDLPRD LTEEVLSRIP VTSMRAVRFT CKKWNTLSKD RSFTKKHLRG ARAAAKKKQT KEFQVIMMIQ FRVYLYSVNL LNPSIERIGK LISLDVEDHV
101: DISKIFHCGG LLLCITKDIS RLVVWNPYSG QTRWIKPRNS YHRLDRYALG YEEKNKSCRC YKILRFMDDY EDDRALRLIR EFEIYDLNSD SWKVVNVTPD
201: WDVEFYHRGL SLKGNTYWFA QEKLPPLPRG RVITISDMAD FLLCFDFTRE RFGPRLPLPF HSFVEDTVTL SSVRDKKLAV LFQPCSASTV KIWISRKIEP
301: NAVSWRKVFL AVDMKSLTGF QFDINAASFF VDEKKKVAMV LDKDRFSYKF TRNIAYIIGK KGYFEKVDLG ESTVSSCASL VCSYVPSSVQ I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)