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AT1G70360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.446
cytosol 0.419
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G23780.1); Has 112 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC003671EMBL:CP002684EnsemblPlants:AT1G70360EnsemblPlants:AT1G70360.1
entrez:843372GeneID:843372Genevisible:O64600Gramene:AT1G70360.1
hmmpanther:PTHR34791hmmpanther:PTHR34791:SF1HOGENOM:HOG000112527InParanoid:O64600
InterPro:IPR001810KEGG:ath:AT1G70360OMA:TCELTIVPaxDb:O64600
Pfam:O64600Pfam:PF00646Pfscan:PS50181PhylomeDB:O64600
PIR:T01486PRIDE:O64600PRO:PR:O64600PROSITE:PS50181
ProteinModelPortal:O64600Proteomes:UP000006548RefSeq:NP_177193.1SUPFAM:SSF81383
TAIR:AT1G70360TMHMM:TMhelixUniGene:At.52462UniProt:O64600
Coordinates (TAIR10) chr1:+:26508778..26509325
Molecular Weight (calculated) 19420.90 Da
IEP (calculated) 4.54
GRAVY (calculated) 0.31
Length 174 amino acids
Sequence (TAIR10)
(BLAST)
001: MEESGDTCEL TIVIMTVHAV MLESGFVLFD PDSSMRFSFS KKTLVSLNYT LPSVKGIVGL NFEKEAIVGS FVRVVSIDKR SYVHIVDLLM ETLKSDEEED
101: TLSIDCKVLV WWRMIKDGIV TPLLVDLCYK TGLELPPCFI SLPRELKHKI LESLPGVDIG TLACVSSELR DMAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)