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AT4G24220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
encodes a novel protein containing mammalian death domain involved in programmed cell death. Gene is expressed in vascular system and mutants carrying dominant mutation in the gene have defective vascular patterning. Gene expression is induced specifically by wounding.
Computational
Description (TAIR10)
VEIN PATTERNING 1 (VEP1); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: xylem and phloem pattern formation, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G58750.1); Has 706 Blast hits to 702 proteins in 199 species: Archae - 0; Bacteria - 237; Metazoa - 0; Fungi - 166; Plants - 221; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT4G24220-MONOMERBioGrid:13812BRENDA:1.3.1.3EC:1.3.1.3
eggNOG:ENOG410IH3AeggNOG:ENOG410XPIJEMBL:AL078637EMBL:AL161561
EMBL:AY062451EMBL:AY087323EMBL:BT008479EMBL:CP002687
EMBL:EF579963EMBL:X99793EnsemblPlants:AT4G24220EnsemblPlants:AT4G24220.1
entrez:828523Gene3D:3.40.50.720GeneID:828523Genevisible:Q9STX2
GO:GO:0005829GO:GO:0008202GO:GO:0009611GO:GO:0010051
GO:GO:0035671GO:GO:0047787hmmpanther:PTHR32487hmmpanther:PTHR32487:SF0
HOGENOM:HOG000216741InParanoid:Q9STX2InterPro:IPR016040KEGG:ath:AT4G24220
OMA:PERWSKIPaxDb:Q9STX2Pfam:Q9STX2PhylomeDB:Q9STX2
PIR:T09885PRIDE:Q9STX2PRO:PR:Q9STX2ProteinModelPortal:Q9STX2
Proteomes:UP000006548RefSeq:NP_001078438.1RefSeq:NP_194153.1SMR:Q9STX2
STRING:3702.AT4G24220.1SUPFAM:SSF51735TAIR:AT4G24220tair10-symbols:AWI31
tair10-symbols:VEP1UniGene:At.32364UniGene:At.71005UniProt:Q9STX2
Coordinates (TAIR10) chr4:+:12565219..12566474
Molecular Weight (calculated) 44232.60 Da
IEP (calculated) 4.84
GRAVY (calculated) -0.33
Length 388 amino acids
Sequence (TAIR10)
(BLAST)
001: MSWWWAGAIG AAKKKLDEDE PSQSFESVAL IIGVTGIVGN SLAEILPLSD TPGGPWKVYG VARRPRPTWN ADHPIDYIQC DVSDAEDTRS KLSPLTDVTH
101: VFYVTWTNRE SESENCEANG SMLRNVLQAI IPYAPNLRHV CLQTGTKHYL GPFTNVDGPR HDPPFTEDMP RLQIQNFYYT QEDILFEEIK KIETVTWSIH
201: RPNMIFGFSP YSLMNIVGTL CVYAAICKHE GSPLLFPGSK KAWEGFMTAS DADLIAEQQI WAAVDPYAKN EAFNCNNADI FKWKHLWKIL AEQFGIEEYG
301: FEEGKNLGLV EMMKGKERVW EEMVKENQLQ EKKLEEVGVW WFADVILGVE GMIDSMNKSK EYGFLGFRNS NNSFISWIDK YKAFKIVP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)