suba logo
AT3G18820.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32219438 (2020): cytosol
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30875866 (2019): plasma membrane
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog G3F
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog G3F (RAB7B); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3E (TAIR:AT1G49300.2); Has 26432 Blast hits to 26399 proteins in 759 species: Archae - 38; Bacteria - 171; Metazoa - 13566; Fungi - 4011; Plants - 2887; Viruses - 20; Other Eukaryotes - 5739 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNZVeggNOG:KOG0394EMBL:AB026654EMBL:AB071846
EMBL:AY035137EMBL:AY059072EMBL:AY084266EMBL:CP002686
EnsemblPlants:AT3G18820EnsemblPlants:AT3G18820.1entrez:821415Gene3D:3.40.50.300
GeneID:821415Genevisible:Q9LS94GO:GO:0005525GO:GO:0005634
GO:GO:0005794GO:GO:0005886GO:GO:0007264GO:GO:0015031
Gramene:AT3G18820.1hmmpanther:PTHR24073hmmpanther:PTHR24073:SF375HOGENOM:HOG000233968
InParanoid:Q9LS94InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417
KEGG:ath:AT3G18820KO:K07897OMA:FLVHANIPaxDb:Q9LS94
Pfam:PF00071Pfam:Q9LS94Pfscan:PS51419PhylomeDB:Q9LS94
PRIDE:Q9LS94PRO:PR:Q9LS94PROSITE:PS51419ProteinModelPortal:Q9LS94
Proteomes:UP000006548RefSeq:NP_188512.1SMR:Q9LS94STRING:3702.AT3G18820.1
SUPFAM:SSF52540TAIR:AT3G18820tair10-symbols:ATRAB7Btair10-symbols:ATRABG3F
tair10-symbols:RAB71tair10-symbols:RAB7Btair10-symbols:RABG3FTIGRfam:TIGR00231
TIGRFAMs:TIGR00231UniGene:At.24625UniProt:Q9LS94
Coordinates (TAIR10) chr3:+:6484266..6486005
Molecular Weight (calculated) 23103.20 Da
IEP (calculated) 4.71
GRAVY (calculated) -0.41
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSRRRTLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV QFEDRLFTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NSMKSFENLN
101: NWREEFLIQA SPSDPENFPF VLIGNKVDVD DGNSRVVSEK KAKAWCASKG NIPYFETSAK VGTNVEEAFQ CIAKDALKSG EEEELYLPDT IDVGTSNQQR
201: STGCEC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)