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AT1G13195.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G24440.1); Has 912 Blast hits to 912 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 381; Fungi - 25; Plants - 358; Viruses - 17; Other Eukaryotes - 131 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRM0eggNOG:KOG1039EMBL:AC007357EMBL:AK226915
EMBL:AY087531EMBL:BT024484EMBL:CP002684EnsemblPlants:AT1G13195
EnsemblPlants:AT1G13195.1entrez:837878ExpressionAtlas:Q9SAF3Gene3D:3.30.40.10
GeneID:837878GO:GO:0008270Gramene:AT1G13195.1hmmpanther:PTHR15315
hmmpanther:PTHR15315:SF35HOGENOM:HOG000241127InterPro:IPR001841InterPro:IPR013083
InterPro:IPR017907OMA:KLTTHGRPfam:PF13639Pfam:PF13920
Pfscan:PS50089PhylomeDB:Q9SAF3PIR:D86266PROSITE:PS00518
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_563922.1scanprosite:PS00518
SMART:SM00184SMR:Q9SAF3STRING:3702.AT1G13195.1SUPFAM:SSF57850
TAIR:AT1G13195UniGene:At.27310UniGene:At.48183UniProt:Q9SAF3
Coordinates (TAIR10) chr1:-:4501778..4503347
Molecular Weight (calculated) 29749.80 Da
IEP (calculated) 7.65
GRAVY (calculated) -0.17
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MYNQLAISSS SSSSSYYESL KVLEADVQHA NSLAEAIPMG KNNVRLQMKL VHSNFASLLL FLLRWIDLSS SCLIPRYLNL FHVLVYKVQS DGQPKLTTHG
101: RKATISEFYG VILPSLQLLH SNLDELETTD IGFDLKRLSK KITKEARSSR FSNAGLEREE ECGICLETCT KMVLPNCCHS MCIKCYRNWN LKSQSCPFCR
201: GSMKRVNSED LWVLAGDNDV VDTRTASRED LFRFYLYINS LPKDYPEALF VVYYEYSNLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)