AT3G11850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF593 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function, DUF593; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT5G06560.1); Has 665 Blast hits to 623 proteins in 106 species: Archae - 4; Bacteria - 38; Metazoa - 138; Fungi - 31; Plants - 334; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3739222..3741101 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57776.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.82 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||||||
| Length | 504 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESPIKCCDC GCDCCSSSPG SWIRSVKKRR HDELQTEKRF SIPELDDLDM FSNPRVQIEN ECELLRETVS NQQQTIQDLY HELEQERIAS STAADETVKM 101: IQTLEREKAK IDLELKQLQR SVDETLNYEN QEIEALENMV YQRDQTIQAL TFETQAYKHR MMSFGLTEAE ADGERSLLSR NPSMIDFSSE YDCPTQDYPP 201: LKCNINENQD PLEADIYVAD DENYPPADSP HGRVHLKTLD RRLSQMETNP SFTQLNRGRD VSEKGMVGES PRRQRHFRRI SPTGSSSSHL GASKELRPDV 301: FVDSPRSQSY SSKKMEDVSY TENNNAKDDL SEIGDDMSDR VYTIDSVHHS SVAHSGGVAE QKIEDGASDG NVVFPREHTD LGDPDITKLY MRLQALEADR 401: ESMKHALLSM RTEKAQMVLL KEIAQHLSKE VVPQRRLPLR KASIAGPLTF TPVFKWITSF VSWKRKARRS KYMYGMSGNN IGLQMLLEKV PRSRKWRCLR 501: STQV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)