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AT5G16820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : heat shock factor 3
Curator
Summary (TAIR10)
Encodes a putative transcription factor whose expression is not induced by heat but whose stable overexpression leads to expression of HSP. Required early in the stress response for transient expression of heat shock genes.
Computational
Description (TAIR10)
heat shock factor 3 (HSF3); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A1E (TAIR:AT3G02990.1); Has 2455 Blast hits to 2420 proteins in 254 species: Archae - 0; Bacteria - 23; Metazoa - 373; Fungi - 496; Plants - 855; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink).
Protein Annotations
BioGrid:16821eggNOG:COG5169eggNOG:KOG0627EMBL:AL391147
EMBL:CP002688EMBL:Y14068EnsemblPlants:AT5G16820EnsemblPlants:AT5G16820.1
EnsemblPlants:AT5G16820.2entrez:831545Gene3D:1.10.10.10GeneID:831545
Genevisible:O81821GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0005737GO:GO:0006351GO:GO:0009408GO:GO:0043565
Gramene:AT5G16820.1Gramene:AT5G16820.2hmmpanther:PTHR10015hmmpanther:PTHR10015:SF199
HOGENOM:HOG000237979InParanoid:O81821InterPro:IPR000232InterPro:IPR011991
InterPro:IPR027725KEGG:ath:AT5G16820KO:K09419ncoils:Coil
OMA:AINDIFWPANTHER:PTHR10015PaxDb:O81821Pfam:O81821
Pfam:PF00447PhylomeDB:O81821PIR:T51514PIR:T51945
PRIDE:O81821PRINTS:PR00056PRO:PR:O81821PROSITE:PS00434
ProteinModelPortal:O81821Proteomes:UP000006548Reactome:R-ATH-3371453Reactome:R-ATH-3371511
Reactome:R-ATH-3371568Reactome:R-ATH-3371571RefSeq:NP_197184.2RefSeq:NP_850832.1
scanprosite:PS00434SMART:SM00415SMR:O81821STRING:3702.AT5G16820.1
SUPFAM:SSF46785TAIR:AT5G16820tair10-symbols:ATHSF3tair10-symbols:ATHSFA1B
tair10-symbols:HSF3tair10-symbols:HSFA1BUniGene:At.1639UniGene:At.5364
UniProt:O81821
Coordinates (TAIR10) chr5:+:5530446..5532497
Molecular Weight (calculated) 53579.40 Da
IEP (calculated) 4.52
GRAVY (calculated) -0.68
Length 481 amino acids
Sequence (TAIR10)
(BLAST)
001: MESVPESVPS PNSNTPSIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWSAP EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)