AT5G26040.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|
||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||
| Description (TAIR10) | protein_coding : histone deacetylase 2 | ||||||||||||
| Curator Summary (TAIR10) |
Class III RPD3 type protein. Encodes HDA2, a member of the histone deacetylase family proteins. | ||||||||||||
| Computational Description (TAIR10) |
histone deacetylase 2 (HDA2); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 9 (TAIR:AT3G44680.1); Has 5195 Blast hits to 5176 proteins in 1086 species: Archae - 142; Bacteria - 1739; Metazoa - 784; Fungi - 275; Plants - 317; Viruses - 0; Other Eukaryotes - 1938 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
|
||||||||||||
| Coordinates (TAIR10) | chr5:-:9099321..9101598 | ||||||||||||
| Molecular Weight (calculated) | 40653.70 Da | ||||||||||||
| IEP (calculated) | 6.52 | ||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||
| Length | 359 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTHTRVISTW TELTRDLAIY LLFTFFAIKV FKFLFSCNRT SEISSFSMAT HPEALRRERI LNSKLYFDVP LSKVSIIYSS SYDISFMGIE KLHPFDSSKW 101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH 201: HCTAERGDLD AHQGNGHETD LGDDNRVYIL DMYNPEIYPF DYRARRFIDQ KVEVMSGTTT DEYLRKLDEA LEVASRNFQP ELVIYNAGTD ILDGDPLGLL 301: KISPDGITSR DEKVFRFARE KNIPLVMLTS GGYMKSSARV IADSIENLSR QGLIQTRPE |
||||||||||||
| See Also |
|
||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)