AT1G67660.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Restriction endonuclease, type II-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Restriction endonuclease, type II-like superfamily protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YqaJ viral recombinase family (InterPro:IPR019080), Putative phage-type endonuclease (InterPro:IPR017482), Exonuclease, phage-type/RecB, C-terminal (InterPro:IPR011604), Restriction endonuclease, type II-like (InterPro:IPR011335); BEST Arabidopsis thaliana protein match is: Restriction endonuclease, type II-like superfamily protein (TAIR:AT1G13810.1); Has 531 Blast hits to 531 proteins in 112 species: Archae - 0; Bacteria - 154; Metazoa - 63; Fungi - 0; Plants - 69; Viruses - 30; Other Eukaryotes - 215 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:25363587..25365069 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40465.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.46 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||
| Length | 355 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMMRLVQVSS TESISSISAS SARNGGVLYL KRGSVCVCRV LKPNKVALNS MILSAMRTCS ISGFHTHLPK SSGSVSSRKR FSSTALSLIT QTISPFAHPR 101: SSVIVSSLLS PSDIPQKSEE WFALRKDKLT TSTFSTALGF WKGNRRAELW HEKVYDSDAR VVEESARFAM NWGVQMESSA IERYKRIMGC EVGTMGFAIH 201: SNEEFHWLGA SPDGILDCFG ILEVKCPYNK GKTETVLPWK KVPYYYMPQL QGQMEIMDRE WVNLYCWTRN GSTVFRVMRD RSYWRIIHDV LREFWWESVI 301: PAREALLLGK EDEEVKKYEP TSTHKRTKLA IAKSLNLAAE SKLVCREIAD HVEFF |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)