suba logo
AT3G02660.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 2768 (emb2768); FUNCTIONS IN: RNA binding, tyrosine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (InterPro:IPR002307), RNA-binding S4 (InterPro:IPR002942), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); Has 9022 Blast hits to 9013 proteins in 2715 species: Archae - 16; Bacteria - 5542; Metazoa - 116; Fungi - 145; Plants - 38; Viruses - 0; Other Eukaryotes - 3165 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G02660-MONOMEREC:6.1.1.1eggNOG:COG0162eggNOG:KOG2623
EMBL:AC021640EMBL:AK221609EMBL:BT029296EMBL:CP002686
EnsemblPlants:AT3G02660EnsemblPlants:AT3G02660.1entrez:821282Gene3D:3.10.290.10
Gene3D:3.40.50.620GeneID:821282Genevisible:Q9M876GO:GO:0003723
GO:GO:0004831GO:GO:0005524GO:GO:0005739GO:GO:0005829
GO:GO:0006437GO:GO:0009507GO:GO:0009570GO:GO:0009793
GO:GO:0043039Gramene:AT3G02660.1HAMAP:MF_02006hmmpanther:PTHR11766
hmmpanther:PTHR11766:SF0HOGENOM:HOG000242790InParanoid:Q9M876InterPro:IPR001412
InterPro:IPR002305InterPro:IPR002307InterPro:IPR002942InterPro:IPR014729
InterPro:IPR024088InterPro:IPR024107KEGG:00970+6.1.1.1KEGG:ath:AT3G02660
KO:K01866OMA:GKHFPVNPANTHER:PTHR11766PaxDb:Q9M876
Pfam:PF00579Pfam:PF01479Pfscan:PS50889PhylomeDB:Q9M876
PRIDE:Q9M876PRINTS:PR01040PRO:PR:Q9M876PROSITE:PS00178
PROSITE:PS50889ProteinModelPortal:Q9M876Proteomes:UP000006548RefSeq:NP_186915.1
scanprosite:PS00178SMART:SM00363SMR:Q9M876STRING:3702.AT3G02660.1
SUPFAM:SSF52374SUPFAM:SSF55174TAIR:AT3G02660tair10-symbols:emb2768
TIGRfam:TIGR00234TIGRFAMs:TIGR00234UniGene:At.41099UniProt:Q9M876
Coordinates (TAIR10) chr3:-:570221..571756
Molecular Weight (calculated) 56622.00 Da
IEP (calculated) 6.29
GRAVY (calculated) -0.12
Length 511 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYATGITFA SRSILPICSR TFLSPLRVAS LLVFPEKSSA TFFRRVQVPH LFSTSTTTLF SSVKCSIHST SSPETENQAV FRPNVVDILE ERGLLESITS
101: ENLRSACSDP KVAPLRVYCG FDPTAESLHL GNLLGIIVLS WFQRCGHQAV GLIGGATGRV GDPSGKSLER PELDADTLEK NIAGITKIII KILGSNPSPG
201: GSYVIFNNYD WWKDMTMLDF LNKVGRFARV GTMMAKESVK KRLESEQGMS YTEFTYQLLQ AYDFLHLFKN EGINVQIGGS DQWGNITAGT DLIRKILQAE
301: EAAYGLTFPL LLKNDGTKFG KSEDGAIWLS PSMLSPYKFY QYFFSVPDVD VIRFLKTLTF LSLDEIKILE DQMSKPGYVP NTAQIKLAEE VTRFVHGEEG
401: LKEAIKATEA LRPGAETKLD WNLIERIAED IPSCSLPIDR VSGLSIVDLS VSAGLFESKS AARRMLKQGG FYMNNERVDD ENKRVDEEDI VEGRGLVLSA
501: GKKNKVVVRI S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)