AT5G17250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.905 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Alkaline-phosphatase-like family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Alkaline-phosphatase-like family protein; FUNCTIONS IN: transferase activity, catalytic activity; INVOLVED IN: GPI anchor biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT2G22530.1); Has 1431 Blast hits to 1201 proteins in 306 species: Archae - 0; Bacteria - 228; Metazoa - 476; Fungi - 488; Plants - 85; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5668993..5673516 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 102300.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.78 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.29 | ||||||||||||||||||||||||||||||||||||
| Length | 925 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METYLKNKKL TALGFLLIHA IAILIFTRGF LLTRTELPFH STCSDVSLSP CLASPRSNHD SSSGQSNQTQ PKCWTKPVVD RVIIIVLDAL RIDFVAPSAF 101: FPEPKPWMDK LTILQTLAFA NDSSAKIFKA FADPPTTSLQ RLKGLTTGGL PTFIDIGNSF GAPAIVEDNF INQLVLNGKR LVMMGDDTWT QLFPNQFQKS 201: YPFPSFNVKD LDTVDNGCIE HLFPTLFKDD WDVLIAHFLG VDHAGHIFGV DSSPMINKLE QYNSVLEKVI NILESQAGPG GLHENTMLIV MGDHGQTLNG 301: DHGGGTAEEV ETTMFAMSTK KHTTLVPPEF DTSSCKQNKD GKQMCISYIE QLDFAATLSA LLGISFPFGS IGHVNPELYA LGSSSWNLDK SDLGNFGTQS 401: AANEWMKHYV DVLCVNAWQV KRYIDVYSNS SVVGFSSDDM SRISDLYSAA EQNWSNSVKH ILMDRNGDDG STDISALLKE QIAEYLNFFS SVVELARSKW 501: TEFNLNLMIT GFGILVISLI LQFLAVFHGD KSYAVGSWLS TGAAFTLFIV TIRACSFLSN SYILEEGKVA NFLLATTGLI KLRYSVMRKT MRKEAFMFLA 601: MVFVLRVSID IGLTKQAATS QFMSSSPSWM LGIAPDHPAL TYAIEIAPIL SVVILICVLY VAIAKAPNEG VWKYVTVGSM LLQVTGGRNR IPQTVYVIGL 701: VQLCLLASAR MFCTEKDKNW AIRTVALVSA CSSPIILLSG KQGSMLALVY LVAGYCIMRL EGVERRTKSD GQSKFSKLNP LCVVQWSLLS ICMFFASGHW 801: CAFDGLRYGA AFVGFDEFVL IRQAILLTIE TFGFSIILSV FGLPLLIPFH SQTPQAHGEK RHQLFQMYML FGVISATTVT ATILCVTIQR RHLMVWGLFA 901: PKFVFDVVDL ILTDLLICLA SAYYL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)