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AT1G07290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15480787 (2004): Golgi Golgi apparatus Golgi membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : golgi nucleotide sugar transporter 2
Curator
Summary (TAIR10)
Encodes a GDP-mannose transporter.
Computational
Description (TAIR10)
golgi nucleotide sugar transporter 2 (GONST2); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: golgi nucleotide sugar transporter 1 (TAIR:AT2G13650.3); Has 1672 Blast hits to 1666 proteins in 234 species: Archae - 0; Bacteria - 5; Metazoa - 480; Fungi - 272; Plants - 768; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5070eggNOG:KOG1444EMBL:AC022464EMBL:AJ551325
EMBL:CP002684EnsemblPlants:AT1G07290EnsemblPlants:AT1G07290.1entrez:837240
GeneID:837240Genevisible:Q84L09GO:GO:0000139GO:GO:0008643
GO:GO:0015780GO:GO:0015784GO:GO:0016021Gramene:AT1G07290.1
hmmpanther:PTHR11132hmmpanther:PTHR11132:SF81InParanoid:Q84L09InterPro:IPR004853
KEGG:ath:AT1G07290KO:K15356OMA:RSECDDIPaxDb:Q84L09
Pfam:PF03151Pfam:Q84L09PhylomeDB:Q84L09PRIDE:Q84L09
PRO:PR:Q84L09ProteinModelPortal:Q84L09Proteomes:UP000006548RefSeq:NP_172209.4
STRING:3702.AT1G07290.1TAIR:AT1G07290tair10-symbols:GONST2TCDB:2.A.7.13.4
TMHMM:TMhelixUniGene:At.42307UniProt:Q84L09
Coordinates (TAIR10) chr1:-:2242284..2244428
Molecular Weight (calculated) 41633.40 Da
IEP (calculated) 9.80
GRAVY (calculated) 0.44
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAVKLEAIV CHEPDESELS HLSDNGSKTK NGVVFQLLDQ KSSEHRWFSE RFLRWRRRYL PVDGDNRRDH GSVKQSGPLV SGAAYCISSC SMIILNKIVL
101: SSYNFNAGVS LMLYQNLISC LVVAVLDISG VVSVEKFNWK LIRVWMPVNV IFVGMLVSGM YSLKYINVAM VTILKNATNI LTGIGEVYMF RKRQNNKVWA
201: AMFMMIISAI SGGITDLTFD AVGYTWQLAN CFLTASYSLT LRRVMDKAKQ STKSGSLNEV SMVLLNNLLS IPFGIILIIL LGEWRYVIST DVTKDSMFWV
301: VATASGFLGL AISFTSMWFL HQTGPTTYSL VGSLNKVPIS LAGLVLFNVP LSLPNLFSIL FGLFAGVVFA RAKMS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)