AT5G24340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 3'-5' exonuclease domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
3'-5' exonuclease domain-containing protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF82 (InterPro:IPR002782), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G56310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:8297328..8300156 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57705.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.28 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||
| Length | 505 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METNLKIYLV SSTDSSEFTH LKWSFTRSTI IALDAEWKPQ HSNTSSFPTV TLLQVACRLS HATDVSDVFL IDLSSIHLPS VWELLNDMFV SPDVLKLGFR 101: FKQDLVYLSS TFTQHGCEGG FQEVKQYLDI TSIYNYLQHK RFGRKAPKDI KSLAAICKEM LDISLSKELQ CSDWSYRPLT EEQKLYAATD AHCLLQIFDV 201: FEAHLVEGIT VQDLRVINVG LQEILTESDY SSKIVTVKLC KATDVIRSMS ENGQNIANGV VPRKTTLNTM PMDENLLKIV RKFGERILLK ESDLLPKKLK 301: KKTRRRVASS TMNTNKQLVC SADWQGPPPW DSSLGGDGCP KFLLDVMVEG LAKHLRCVGI DAAIPHSKKP DSRELLDQAF KENRVLLTRD TKLLRHQDLA 401: KHQIYRVKSL LKNEQLLEVI ETFQLKISGN QLMSRCTKCN GKFIQKPLSI EEAIEAAKGF QRIPNCLFNK NLEFWQCMNC HQLYWEGTQY HNAVQKFMEV 501: CKLSE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)