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AT3G49000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA polymerase III subunit RPC82 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA polymerase III subunit RPC82 family protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase III subunit RPC82-related, helix-turn-helix (InterPro:IPR013197), RNA polymerase III Rpc82, C -terminal (InterPro:IPR008806); Has 265 Blast hits to 257 proteins in 119 species: Archae - 0; Bacteria - 2; Metazoa - 106; Fungi - 69; Plants - 57; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPVHeggNOG:KOG2587EMBL:AY099634EMBL:BT010381
EMBL:CP002686EnsemblPlants:AT3G49000EnsemblPlants:AT3G49000.1entrez:824061
GeneID:824061GO:GO:0003677GO:GO:0003899GO:GO:0006351
Gramene:AT3G49000.1hmmpanther:PTHR12949HOGENOM:HOG000082749InterPro:IPR008806
InterPro:IPR013197KEGG:ath:AT3G49000KO:K03023OMA:NQLPTAR
Pfam:PF05645Pfam:PF08221PhylomeDB:Q8LPK6Proteomes:UP000006548
Reactome:R-ATH-1834949RefSeq:NP_566914.1SMR:Q8LPK6STRING:3702.AT3G49000.1
TAIR:AT3G49000UniGene:At.22360UniGene:At.43222UniProt:Q8LPK6
Coordinates (TAIR10) chr3:+:18162903..18165846
Molecular Weight (calculated) 59339.70 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.28
Length 523 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMSEFGIVY AIHIITVQFG SVVSKVCECL LRKGPLSSRD ISRLAESDIN HNKVKDILYL LIQHNCVQAF SIEPPDGSES KAIVQYIVLF NNILHRVRYN
101: KFSRIVNEEL DSKCGAVLDG LLSNGRLTLG QFIERDRDSG NTIGSEAIRD SLQKLVAARF VERIPSPEPV LGNKEKEPAK RRGAKAAKIL KEPETLEEQV
201: VEAATPVDAI RFPLIFEEDS NSSLADDNSN ITEGKRKQRD VDTSDSSSGV IWRPNFEEFI HRLRHKACVE IVKERRDEGC AIVLRAMLEV GRSQEKKVKT
301: DNSAPMSVGS IYEEVIKTEA GRTMLQERVE ACLDQLSATS SYLPAFVNEV NDSYIVDYKS IISVAQKDEI EAVVMRRYGK EAFRMFRYLS QEGRFVETDK
401: IADAALTEKK DTPQFLLKMW KDGYLHMQKL AVTAPGMYTP FLLWKVNKLI VTTQMLDEMY HASLNLSLRL AHELEAEKEL LLLPLDKLEG PLKERLKKVK
501: AKRLLLSSTM FKLDDAIMLF HDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)