AT3G45900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ribonuclease P protein subunit P38-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ribonuclease P protein subunit P38-related; BEST Arabidopsis thaliana protein match is: Ribonuclease P protein subunit P38-related (TAIR:AT5G53020.1); Has 1049 Blast hits to 987 proteins in 199 species: Archae - 26; Bacteria - 115; Metazoa - 530; Fungi - 58; Plants - 90; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:16874566..16875984 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 45345.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.16 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||
| Length | 389 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKPEEEEER LRMRSFVEEE KEHDELKKLA KSFLVLSFSV MLAHLPNDAI SLVPRLTSQV TELKRRLATA EEQVRQMKSR RVEDSKANAR VVEIFASHRN 101: AWQEEEKRLL NRIHEIEEER EDFMNRISEL EREVSERDEM IGFMSRREIE EEDDDDGQGD ESSERYAVDH LTLSSSPSPN AYGNFNPFQD LQYESLESVY 201: RMKHFVPRRE SPWKIDSEGT GVSAKLRLLE EELLNLEKVC RPSDISKVPS LLKKQAKRYQ ALSGKIDDLC RRMQSSDPCD ATLGPEFRTQ RQNEFLLECF 301: RLQQRASETG QKLVSLQTEI TRSNQGDQLS QAKMNTGRSL DLIKNNLKEV QRNLEIWLAR IIGDLEGILA RDGASRVREF YVARYPFVQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)