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AT5G07670.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.575
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G51380.1); Has 3082 Blast hits to 1820 proteins in 183 species: Archae - 0; Bacteria - 20; Metazoa - 1308; Fungi - 229; Plants - 1264; Viruses - 0; Other Eukaryotes - 261 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ54eggNOG:KOG1947EMBL:AB010070EMBL:AY070039
EMBL:AY096547EMBL:CP002688EnsemblPlants:AT5G07670EnsemblPlants:AT5G07670.1
entrez:830660ExpressionAtlas:Q8VYT5Gene3D:3.80.10.10GeneID:830660
Gramene:AT5G07670.1hmmpanther:PTHR24006hmmpanther:PTHR24006:SF442HOGENOM:HOG000030075
InParanoid:Q8VYT5InterPro:IPR001810InterPro:IPR032675KEGG:ath:AT5G07670
KO:K10268OMA:HWHELEHPaxDb:Q8VYT5Pfam:Q8VYT5
Pfscan:PS50181PhylomeDB:Q8VYT5PRIDE:Q8VYT5PRO:PR:Q8VYT5
PROSITE:PS50181ProteinModelPortal:Q8VYT5Proteomes:UP000006548RefSeq:NP_196384.2
SMR:Q8VYT5STRING:3702.AT5G07670.1SUPFAM:SSF52047SUPFAM:SSF81383
TAIR:AT5G07670UniGene:At.28426UniProt:B9DG93UniProt:Q8VYT5
Coordinates (TAIR10) chr5:+:2430421..2432065
Molecular Weight (calculated) 52995.70 Da
IEP (calculated) 7.80
GRAVY (calculated) 0.02
Length 476 amino acids
Sequence (TAIR10)
(BLAST)
001: MSYNTGKESS PVSPLKKRRA SWSELWVNHH HLLSSSPLDL AAKFQSLTPP ISKSKTLLPD FTLLLPDLIL IRVIQKIPNS QRKNLSLVCK RWFRLHGRLV
101: RSFKVSDWEF LSSGRLISRF PNLETVDLVS GCLISPPNLG ILVNHRIVSF TVGVGSYQSW SFFEENLLSV ELVERGLKAL AGGCSNLRKL VVTNTSELGL
201: LNVAEECSRL QELELHKCSD SVLLGIGAFE NLQILRLVGN VDGLYNSLVS DIGLMILAQG CKRLVKLELV GCEGGFDGIK EIGECCQMLE ELTVCDNKME
301: SGWLGGLRYC ENLKTLKLVS CKKIDNDPDE SLSCCCPALE RLQLEKCQLR DKNTVKALFK MCEAAREIVF QDCWGLDNDI FSLAMAFGRV KLLYLEGCSL
401: LTTSGLESVI LHWHELEHLK VVSCKNIKDS EVSPSLSALF SALVELQWRP DTRSHLSSSL TGTGIGEKGG KFFKKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)