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AT4G14190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G42630.1); Has 17113 Blast hits to 6259 proteins in 178 species: Archae - 1; Bacteria - 6; Metazoa - 71; Fungi - 33; Plants - 16698; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL161538EMBL:BX827455
EMBL:CP002687EMBL:Z97335EnsemblPlants:AT4G14190EnsemblPlants:AT4G14190.1
entrez:827059GeneID:827059Genevisible:O23278GO:GO:0009507
Gramene:AT4G14190.1hmmpanther:PTHR24015HOGENOM:HOG000115636InterPro:IPR002885
KEGG:ath:AT4G14190OMA:VEMKTDPPaxDb:O23278Pfam:O23278
Pfam:PF01535Pfam:PF13041Pfscan:PS51375PhylomeDB:O23278
PIR:D71403PRIDE:O23278PRO:PR:O23278PROSITE:PS51375
ProteinModelPortal:O23278Proteomes:UP000006548RefSeq:NP_193155.4SMR:O23278
STRING:3702.AT4G14190.1TAIR:AT4G14190TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.45814UniProt:O23278
Coordinates (TAIR10) chr4:-:8183594..8185180
Molecular Weight (calculated) 57906.20 Da
IEP (calculated) 8.02
GRAVY (calculated) -0.28
Length 501 amino acids
Sequence (TAIR10)
(BLAST)
001: MENLTTAQFL HRATLLKKPP PPPWNLNSSF LTSTSYSIPR PSSLRRSLPL SINGDATQPT SLLHHHRFLS SLTRRLSLSG SCPLRLLQED GDWSKDHFWA
101: VIRFLRQSSR LHEILPVFDT WKNLEPSRIS ENNYERIIRF LCEEKSMSEA IRAFRSMIDD HELSPSLEIY NSIIHSYADD GKFEEAMFYL NHMKENGLLP
201: ITETYDGLIE AYGKWKMYDE IVLCLKRMES DGCVRDHVTY NLLIREFSRG GLLKRMEQMY QSLMSRKMTL EPSTLLSMLE AYAEFGLIEK MEETCNKIIR
301: FGISLDEGLV RKLANVYIEN LMFSRLDDLG RGISASRTRR TELAWCLRLL CHARLVSRKG LDYVVKEMEE ARVPWNTTFA NIALLAYSKM GDFTSIELLL
401: SELRIKHVKL DLVTVGIVFD LSEARFDGTG VFMTWKKIGF LDKPVEMKTD PLVHAAFGKG QFLRSCEEVK NQSLGTRDGE SKSWTYQYLM ELVVKNQKTV
501: P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)