AT1G73710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G23020.1); Has 67480 Blast hits to 15556 proteins in 325 species: Archae - 2; Bacteria - 89; Metazoa - 1013; Fungi - 877; Plants - 63572; Viruses - 0; Other Eukaryotes - 1927 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27721190..27724165 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 110663.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.15 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 991 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLQPSPPHYS SSRDVRHHHH HHHHHHHLAL SSKARVFPLS LPCNFSSRVS FKLQLHCAAS SSSSVSPPRC SKPNPSSRKR KYGGVIPSIL RSLDSSTDIE 101: TTLASLCLNL SPKEQTVLLK EQTRWERVLR VFRFFQSHQS YVPNVIHYNI VLRALGRAGK WDELRLCWIE MAHNGVLPTN NTYGMLVDVY GKAGLVKEAL 201: LWIKHMGQRM HFPDEVTMAT VVRVFKNSGE FDRADRFFKG WCAGKVDLDL DSIDDFPKNG SAQSPVNLKQ FLSMELFKVG ARNPIEKSLH FASGSDSSPR 301: KPRLTSTFNT LIDLYGKAGR LNDAANLFSE MLKSGVPIDT VTFNTMIHTC GTHGHLSEAE SLLKKMEEKG ISPDTKTYNI LLSLHADAGD IEAALEYYRK 401: IRKVGLFPDT VTHRAVLHIL CQRKMVAEVE AVIAEMDRNS IRIDEHSVPV IMQMYVNEGL VVQAKALFER FQLDCVLSST TLAAVIDVYA EKGLWVEAET 501: VFYGKRNMSG QRNDVLEYNV MIKAYGKAKL HEKALSLFKG MKNQGTWPDE CTYNSLFQML AGVDLVDEAQ RILAEMLDSG CKPGCKTYAA MIASYVRLGL 601: LSDAVDLYEA MEKTGVKPNE VVYGSLINGF AESGMVEEAI QYFRMMEEHG VQSNHIVLTS LIKAYSKVGC LEEARRVYDK MKDSEGGPDV AASNSMLSLC 701: ADLGIVSEAE SIFNALREKG TCDVISFATM MYLYKGMGML DEAIEVAEEM RESGLLSDCT SFNQVMACYA ADGQLSECCE LFHEMLVERK LLLDWGTFKT 801: LFTLLKKGGV PSEAVSQLQT AYNEAKPLAT PAITATLFSA MGLYAYALES CQELTSGEIP REHFAYNAVI YTYSASGDID MALKAYMRMQ EKGLEPDIVT 901: QAYLVGIYGK AGMVEGVKRV HSRLTFGELE PSQSLFKAVR DAYVSANRQD LADVVKKEMS IAFEAERECS SRSGEEEEDD EEENSEEDEA F |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)