AT4G18820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AAA-type ATPase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunit gamma/ tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G45720.1); Has 12659 Blast hits to 12635 proteins in 2803 species: Archae - 377; Bacteria - 7447; Metazoa - 406; Fungi - 391; Plants - 312; Viruses - 22; Other Eukaryotes - 3704 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10330371..10334090 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 121799.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.18 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1097 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTTTTTTTTR VASSSSTRNN RILKDANGDI GEHLRNHIHL TNCIHLKNNM HKQSPVLTDR ALMRDLIVLQ RSRSLRDPSA SPPAWNTPPS VVDLLPKKGD 0101: LVEGGRRSVD LKKSSRRLSA LSGSSPVVNF GTSKVTPSDE RSGPVSGERD SGRRVKREES SRKSYRIGDD YQNVNEVVSH GSGSKASRRL SRVNDAMVKT 0201: LSDQLNEVVV GDSDDVVSSN VRPRVRYGGG GGGGNTRGCA GGMSRPKRRK FRGTRRVRGK SRDTGGGKSE MSVASNTLPQ VEKHDGEKEG FGEQNMTKAC 0301: GIPFNWSRIH HRGKTFLDKA GRSLSCGMSD SKGGRKGETN ERNGSDKMMI QSDDDSSSFI GSDGEALPLL VDSGENDGWV HDYSGELGIF ADSLLKNDED 0401: SDLASEGRSG EKKHKKKSHV NARHRHRQQH QSLTEKYTPK TFRDLLGQNL VVQALSNAVA RRKLGLLYVF HGPNGTGKTS CARIFARALN CHSMEQPKPC 0501: GTCSSCVSHD MGKSWNIREV GPVGNYDFEK IMDLLDGNVM VSSQSPRVFI FDDCDTLSSD CWNALSKVVD RAAPRHVVFI LVCSSLDVLP HVIISRCQKF 0601: FFPKLKDADI VYSLQWIASK EEIEIDKDAL KLIASRSDGS LRDAEMTLEQ LSLLGQRISV PLVQELVGLV SDEKLVDLLD LALSADTVNT VKNLRTIMET 0701: SVEPLALMSQ LATVITDILA GSYDFTKDQH KRKFFRRQPL PKEDMEKLRQ ALKTLSEAEK QLRVSNDKLT WLTAALLQLA PDQNYLLQRS STADTGGRES 0801: SDHHLDPSSD AAGGRSSGLD RRRGDSRKNR PAVEEIWLEV IEKLRVNGLR EFLYKEGRIV SLNLGSAPTV HLMFSSPLTK STAEKFRSHI MQAFEAVLES 0901: PVTIEIRCET KKDPRNNVHH HHHHPTVKDK SLPQSLALIG HDYNIDGSGR SEIVEVTESN GQRRQQQKQQ EEERTEPVGS SALARARRKH LEASQSQNQS 1001: QSIVRGKVSL AHVIQQADGC SLQNGWSKRK AVSIAEKLEQ ENLRLEPRSR SLLCWKSSRG TRRKATRLKV RTRRARPHTL LKLVSCGKCL STRSPTR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)