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AT5G49230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Drought-responsive family protein
Curator
Summary (TAIR10)
Identified in a screen for mutations hypersensitive to red and blue light. Mutants have shorter hypocotyls. Encodes a nuclear localized protein with similarity to drought induced proteins. Contains a ZZ zinc finger domain which is thought to mediate protein-protein interactions.May be involved in red and blue light signal transduction.
Computational
Description (TAIR10)
HYPERSENSITIVE TO RED AND BLUE (HRB1); CONTAINS InterPro DOMAIN/s: Drought induced 19/ RING finger protein 114 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: Drought-responsive family protein (TAIR:AT3G06760.1); Has 235 Blast hits to 235 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 235; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:20229DNASU:834983eggNOG:ENOG410IY65eggNOG:ENOG411156E
EMBL:AB016872EMBL:AF372963EMBL:AY133584EMBL:CP002688
EnsemblPlants:AT5G49230EnsemblPlants:AT5G49230.1entrez:834983GeneID:834983
Genevisible:Q9FJ17GO:GO:0005634GO:GO:0009785GO:GO:0010161
Gramene:AT5G49230.1hmmpanther:PTHR31875hmmpanther:PTHR31875:SF6HOGENOM:HOG000238690
InParanoid:Q9FJ17InterPro:IPR008598InterPro:IPR027935InterPro:IPR033347
KEGG:ath:AT5G49230OMA:WINCPPVPANTHER:PTHR31875PaxDb:Q9FJ17
Pfam:PF05605Pfam:PF14571Pfam:Q9FJ17PhylomeDB:Q9FJ17
PRIDE:Q9FJ17PRO:PR:Q9FJ17ProteinModelPortal:Q9FJ17Proteomes:UP000006548
RefSeq:NP_199734.2STRING:3702.AT5G49230.1TAIR:AT5G49230tair10-symbols:HRB1
UniGene:At.64279UniProt:Q9FJ17
Coordinates (TAIR10) chr5:-:19959048..19960422
Molecular Weight (calculated) 23495.80 Da
IEP (calculated) 7.34
GRAVY (calculated) -0.48
Length 211 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSNSWINCP PVFSSSPSSR RYQSRSDLYL GDVEGEDDLK AEFMCPFCAD EFDIVGLCCH IDVNHPVEAK NGVCPVCTKK VGLDIVGHIT TQHGNVFKVQ
101: RRRRLRKGGY SSTYLTLKKE LREANLQSLG GSSTFIPSSN IDSDPLLSSF MFKPPSAIPI TEGDSVAQVS PKDTSKSKIQ QESFSNEDQE KAKKSKFVRG
201: LLWSTMLEDK F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)