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AT5G47970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.390
plasma membrane 0.286
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Aldolase-type TIM barrel family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Aldolase-type TIM barrel family protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; LOCATED IN: nucleus, cytoplasm, phragmoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: FMN-linked oxidoreductases superfamily protein (TAIR:AT3G63510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EC:1.3.1.-eggNOG:COG0042eggNOG:KOG2335EMBL:AB017064
EMBL:AB024025EMBL:AY072094EMBL:AY096579EMBL:CP002688
EnsemblPlants:AT5G47970EnsemblPlants:AT5G47970.1EnsemblPlants:AT5G47970.2entrez:834848
Gene3D:3.20.20.70GeneID:834848GO:GO:0005634GO:GO:0005737
GO:GO:0009524GO:GO:0017150GO:GO:0050660Gramene:AT5G47970.1
Gramene:AT5G47970.2hmmpanther:PTHR11082hmmpanther:PTHR11082:SF29HOGENOM:HOG000259834
InterPro:IPR001269InterPro:IPR013785InterPro:IPR018517KEGG:ath:AT5G47970
KO:K05539OMA:CDFIHIVPANTHER:PTHR11082Pfam:PF01207
PhylomeDB:Q9FI41PIRSF:PIRSF006621PROSITE:PS01136Proteomes:UP000006548
RefSeq:NP_001078731.1RefSeq:NP_199608.1scanprosite:PS01136SMR:Q9FI41
STRING:3702.AT5G47970.1SUPFAM:SSF51395TAIR:AT5G47970UniGene:At.66758
UniProt:Q9FI41
Coordinates (TAIR10) chr5:+:19423420..19425585
Molecular Weight (calculated) 43150.70 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.14
Length 387 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVSEAYSPP LFSIAPMMGW TDNHYRTLAR LITKHAWLYT EMLAAETIVY QEDNLDSFLA FSPDQHPIVL QIGGRNLENL AKATRLANAY AYDEINFNCG
101: CPSPKVSGRG CFGALLMLDP KFVGEAMSVI AANTNAAVTV KCRIGVDDHD SYNELCDFIH IVSSLSPTKH FIIHSRKALL SGLSPSDNRR IPPLKYEFFF
201: ALLRDFPDLK FTINGGINSV VEADAALRSG AHGVMLGRAV YYNPWHILGH VDTVVYGSPS SGITRRQVLE KYKLYGESVL GKYGKGRPNL RDIVRPLINL
301: FHSESGNGQW KRRTDAALLH CTTLQSFLDE VLPAIPDYVL DSSAVKEATG REDLFADVQR LLPPPYEKES FKALERIPTR PVILDEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)