AT3G56300.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.931 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Cysteinyl-tRNA synthetase, class Ia family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Cysteinyl-tRNA synthetase, class Ia family protein; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: cysteinyl-tRNA aminoacylation, translation; LOCATED IN: cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804); BEST Arabidopsis thaliana protein match is: Cysteinyl-tRNA synthetase, class Ia family protein (TAIR:AT5G38830.1); Has 11222 Blast hits to 10904 proteins in 2870 species: Archae - 213; Bacteria - 6026; Metazoa - 414; Fungi - 276; Plants - 133; Viruses - 3; Other Eukaryotes - 4157 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:20880169..20882366 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 55353.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.99 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 489 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSEMEVEKPD LTLYNTMTQL KEVYKPMNPG KIGIYVCGIT AYDYSHIGHA RAAVSFDLLY RYLRHLGYQV TYVRNFTDVD DKAKNCGEKP LDLSNRFCEE 101: YLLDMAALQC LLPTHQPRVS DHMEQIIKMI EKIIENGCGY AVGGDVFFSV DKSPSYGQLS GQRLDHTQAG KRVAVDSRKR NPADFALRKA AKSGEPSWES 201: PWGHGRPGWH IEFDIHGGGA DLKFPHHENE IAQTCAACED SGVNYWLHNG HVTNNNVKMG KSLNNFFTIR QIAANYHPLA LRHFLMSAQY RSPLNYSVSQ 301: LESSSDALYS LSPYREEMSG DVGKTQQSAE AKEMIKKVKN ALKFINVSIS KLKKMQKKQR MSLVVSLVEV EKAVREVLDV LGLLTTLSYG ELLKDMKQKA 401: LTRAGMGEEE VLQRIEERNM ARKSKDFRRS DRIRELLAFK GIFLEDVPGD TVWRPSTPLT KPKSGLGLGM TAIVFAIVFT FLGFFFYSR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)