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AT1G73570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.794
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HCP-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HCP-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G18260.1); Has 17442 Blast hits to 7119 proteins in 1241 species: Archae - 0; Bacteria - 12464; Metazoa - 575; Fungi - 642; Plants - 369; Viruses - 21; Other Eukaryotes - 3371 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0790eggNOG:KOG1550EMBL:AC012396EMBL:AC079676
EMBL:CP002684EnsemblPlants:AT1G73570EnsemblPlants:AT1G73570.1entrez:843691
Gene3D:1.25.40.10GeneID:843691Genevisible:Q9C6B6Gramene:AT1G73570.1
hmmpanther:PTHR11102hmmpanther:PTHR11102:SF84HOGENOM:HOG000239927InParanoid:Q9C6B6
InterPro:IPR006597InterPro:IPR011990KEGG:ath:AT1G73570OMA:HIGTEEN
PaxDb:Q9C6B6Pfam:PF08238Pfam:Q9C6B6PhylomeDB:Q9C6B6
PIR:E96762PRIDE:Q9C6B6PRO:PR:Q9C6B6ProteinModelPortal:Q9C6B6
Proteomes:UP000006548Reactome:R-ATH-5358346Reactome:R-ATH-901032RefSeq:NP_177498.1
SMART:SM00671SMR:Q9C6B6STRING:3702.AT1G73570.1SUPFAM:SSF81901
TAIR:AT1G73570UniGene:At.52497UniProt:Q9C6B6
Coordinates (TAIR10) chr1:+:27650992..27653942
Molecular Weight (calculated) 67764.90 Da
IEP (calculated) 6.27
GRAVY (calculated) -0.36
Length 604 amino acids
Sequence (TAIR10)
(BLAST)
001: MRVSGQSIIA ISLFTLSLYI HRVQARPFVL VLSNEDLNGG FNDNGAYESS DFDEFGESEP KSEEELDPGS WRRIFETNES TVHASASPQY YSGLHKILSA
101: ASEGNTTLME EAVSEIDSSA SSGDPHAQSV MGFVYGIGMM RETSRSKSIL HHHFAAAGGN MQSKMALAFR YLRQNMYDKA VELYAELAET AVNSFLISKD
201: SPMAEPVRIH IGTEENKDAL RKSRGEEDED FQILEYQAEK GNSVAMHKIG LFYYFGLRGL RRDHAKALYW FSKAEFNGLG YLYVKGYGVD KRNYTKAREY
301: FEMAANNEDP SGHYNLGVLY LKGTGVKKDV RHATKYFFVA ANAGQPKAFY QLAKMFHTGV GLTKNLEMAT TFYKLVAERG PWSSLSRWAL EAYLKGDVGK
401: AFILYSRMSE LGYEVAQSNA AWIVDKYGER SMCMGVYGFC TDKERHDRAH SLWWRASEQG NEHAALLIGD AYYYGRGTER DFVRAAEAYM YAKSQSNAQA
501: MFNLGYMHEH GEGLPFDLHL AKRYYDQALQ SDTAAKLPVT LALASVWVRR NYADTALVQV LNSLPEVHQK VVEWVENGML EEVVLDPVGA NVAQPLAAPV
601: AFPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)