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AT5G03250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.965
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G30440.1); Has 979 Blast hits to 958 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 876; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ91eggNOG:ENOG410YCM9EMBL:AB005240EMBL:AK226794
EMBL:AL163002EMBL:CP002688EnsemblPlants:AT5G03250EnsemblPlants:AT5G03250.1
entrez:831894GeneID:831894Genevisible:Q9LYW0GO:GO:0016567
Gramene:AT5G03250.1hmmpanther:PTHR32370hmmpanther:PTHR32370:SF10HOGENOM:HOG000239180
InParanoid:Q9LYW0InterPro:IPR000210InterPro:IPR011333InterPro:IPR027356
KEGG:ath:AT5G03250ncoils:CoilOMA:WNGISASPaxDb:Q9LYW0
Pfam:PF00651Pfam:PF03000Pfam:Q9LYW0Pfscan:PS50097
Pfscan:PS51649PhylomeDB:Q9LYW0PIR:T48346PRIDE:Q9LYW0
PRO:PR:Q9LYW0PROSITE:PS50097PROSITE:PS51649ProteinModelPortal:Q9LYW0
Proteomes:UP000006548RefSeq:NP_195945.1SMART:SM00225SMR:Q9LYW0
SUPFAM:SSF54695TAIR:AT5G03250UniGene:At.23614UniGene:At.54702
UniPathway:UPA00143UniProt:Q9LYW0
Coordinates (TAIR10) chr5:+:774591..776855
Molecular Weight (calculated) 66346.60 Da
IEP (calculated) 5.10
GRAVY (calculated) -0.23
Length 592 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFMRLGSKS EAFHREGQTW LCTTGLVSDV TIEVGDMKFH LHKFPLLSRS GLLERLIEES STDDGSGCVL SLDEIPGGGK TFELVTKFCY GVKIELTAFN
101: VVSLRCAAEY LEMTDNYGEG NLVGMTETFL NEVFGNWTDS IKALQTCEEV IDYAEDLHII SRCVDSLAVK ACADPSLFNW PVGGGKNATS GQNTEDESHL
201: WNGISASGKM LQHTGEDWWF DDASFLSLPL FKRLITAIEA RGMKLENIAM AVMYYTRKHV PLMNRQVNMD EQVIETPNPS EEDQKTCLEE IVGLLPSKKG
301: VNPTKFLLRL LQTAMVLHAS QSSRENLERR IGNQLDQAAL VDLLIPNMGY SETLYDVECV LRMIEQFVSS TEQAGIVPSP CIIEEGHLVK DGADLLTPTT
401: LVATLVDGYL AEVAPDVNLK LAKFEAIAAA IPDYARPLDD GVYHAIDVYL KAHPWITDSE REHICRLMNC QKLSLEASTH AAQNERLPLR VIVQVLFFEQ
501: LRLRTSVSGW FFVSENLDNP DNQHGANGGL LKPRGENVRE RVSELEKECM NMKQELHKLV RTKRSWKNFT RKLNFKKKSE CCKPKDQATP AI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)