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AT5G47960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23532067 (2013): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog A4C
Curator
Summary (TAIR10)
Encodes a small molecular weight g-protein.
Computational
Description (TAIR10)
RAB GTPase homolog A4C (RABA4C); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4D (TAIR:AT3G12160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20095eggNOG:COG1100eggNOG:KOG0087EMBL:AB024025
EMBL:AF218121EMBL:BT024842EMBL:CP002688EnsemblPlants:AT5G47960
EnsemblPlants:AT5G47960.1entrez:834847Gene3D:3.40.50.300GeneID:834847
Genevisible:Q9FE79GO:GO:0005525GO:GO:0005768GO:GO:0005886
GO:GO:0007264GO:GO:0015031Gramene:AT5G47960.1hmmpanther:PTHR24073
hmmpanther:PTHR24073:SF437HOGENOM:HOG000233968InParanoid:Q9FE79InterPro:IPR001806
InterPro:IPR005225InterPro:IPR027417KEGG:ath:AT5G47960KO:K07904
OMA:EKAFMTGPaxDb:Q9FE79Pfam:PF00071Pfam:Q9FE79
Pfscan:PS51419PhylomeDB:Q9FE79PRIDE:Q9FE79PRO:PR:Q9FE79
PROSITE:PS51419ProteinModelPortal:Q9FE79Proteomes:UP000006548RefSeq:NP_199607.1
SMR:Q9FE79STRING:3702.AT5G47960.1SUPFAM:SSF52540TAIR:AT5G47960
tair10-symbols:ATRABA4Ctair10-symbols:RABA4Ctair10-symbols:SMG1TIGRfam:TIGR00231
TIGRFAMs:TIGR00231UniGene:At.49142UniProt:Q9FE79
Coordinates (TAIR10) chr5:-:19421533..19422473
Molecular Weight (calculated) 24840.50 Da
IEP (calculated) 6.55
GRAVY (calculated) -0.32
Length 223 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKFQSNFNQ KIDYVFKVVL IGDSAVGKSQ LLARFSRNEF SIESKATIGV EFQTRTLEID RKTIKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDITKR
101: QSFDHVARWL EELRGHADKN IVIMLIGNKT DLGTLRAVPT EDAKEFAQRE NLFFMETSAL DSNNVEPSFL TVLTEIYRIV SKKNLVANEE GESGGDSSLL
201: QGTKIVVAGE ETESKGKGCC GTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)