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AT5G54490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pinoid-binding protein 1
Curator
Summary (TAIR10)
Encodes a PINOID (PID)-binding protein containing putative EF-hand calcium-binding motifs. The interaction is dependent on the presence of calcium. mRNA expression is up-regulated by auxin. Not a phosphorylation target of PID, likely acts upstream of PID to regulate the activity of this protein in response to changes in calcium levels.
Computational
Description (TAIR10)
pinoid-binding protein 1 (PBP1); CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G27280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20781eggNOG:COG5126eggNOG:KOG0028EMBL:AB026634
EMBL:AY084485EMBL:AY363868EMBL:BT024572EMBL:CP002688
EnsemblPlants:AT5G54490EnsemblPlants:AT5G54490.1entrez:835537Gene3D:1.10.238.10
GeneID:835537Genevisible:Q9LSQ6GO:GO:0005509GO:GO:0009733
Gramene:AT5G54490.1hmmpanther:PTHR10891hmmpanther:PTHR10891:SF585HOGENOM:HOG000238343
IntAct:Q9LSQ6InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247
KEGG:ath:AT5G54490OMA:LLMEPRAPaxDb:Q9LSQ6Pfam:PF13833
Pfam:Q9LSQ6Pfscan:PS50222PhylomeDB:Q9LSQ6PRO:PR:Q9LSQ6
PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:Q9LSQ6Proteomes:UP000006548
RefSeq:NP_200260.1scanprosite:PS00018SMR:Q9LSQ6STRING:3702.AT5G54490.1
SUPFAM:SSF47473TAIR:AT5G54490tair10-symbols:PBP1UniGene:At.29493
UniProt:Q9LSQ6
Coordinates (TAIR10) chr5:+:22121458..22121841
Molecular Weight (calculated) 14469.20 Da
IEP (calculated) 4.14
GRAVY (calculated) -0.42
Length 127 amino acids
Sequence (TAIR10)
(BLAST)
001: MASPKSSTRP NQENQEPQFQ DFFPTMAGKL GGEGLIEEIC KGFELLMDKD KGVITFESLR RNASTVLGLG DLTDDDVRYM INEGDFDRDG ALNQMEFCVL
101: MFRLSPELME ASRCVVTEVI EEEFYRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)