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AT1G68080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); Has 25 Blast hits to 25 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IQZGeggNOG:ENOG410XSBBEMBL:AY924718EMBL:BT020266
EMBL:BT020573EMBL:CP002684EMBL:DQ132678EnsemblPlants:AT1G68080
EnsemblPlants:AT1G68080.1entrez:843136ExpressionAtlas:Q5PP31GeneID:843136
GO:GO:0005506GO:GO:0016705GO:GO:0031418Gramene:AT1G68080.1
hmmpanther:PTHR14049HOGENOM:HOG000064667InterPro:IPR005123InterPro:IPR006620
OMA:AVCYLNDPfam:PF13640Pfam:PF13661Pfscan:PS51471
PhylomeDB:Q5PP31PROSITE:PS51471Proteomes:UP000006548RefSeq:NP_176975.2
SMART:SM00702TAIR:AT1G68080UniGene:At.50011UniProt:Q5PP31
Coordinates (TAIR10) chr1:+:25517530..25519240
Molecular Weight (calculated) 43894.80 Da
IEP (calculated) 5.16
GRAVY (calculated) -0.25
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEKEHPRLI LHNFLSPAEC KELELIHKSS STIGYRPNVF STTLSHLIAT NSPHLIIPFV SIRERLKEKI EETFGCEYEL FIEFTGLISW CKGASIGWHS
101: DDNRSYLKQR DFAAVCYLNS YEKDFIGGLF RFQSGEPVTV APSAGDVIMY TADDRNIHSV DEVTDGERLT LALWFSRDSS HDEDSKLLSR LSQCTSHEVC
201: LPLPASTNMY WFCPHQDGSN QNIGFDVCVA RLHLLGFDVH SLQGEDHSTD ASEQLMGPLQ LAKGGKLLTR KFANILHALQ VVQFYHWKAS ELVTSNVEND
301: TLEEVKAMSH SQLETINALK SVFLLDENLV ATTFGYSCSG EDRKDSLDLT GIALAVTSWE EYSCKLLKEL LSSLPQWKTY QTIHKVESD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)