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AT1G60995.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22318864 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Membralin (InterPro:IPR019144); Has 172 Blast hits to 170 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNPCeggNOG:KOG2092eggNOG:KOG4438EMBL:AK118859
EMBL:CP002684EnsemblPlants:AT1G60995EnsemblPlants:AT1G60995.1entrez:5007825
GeneID:5007825GO:GO:0005783GO:GO:0016021Gramene:AT1G60995.1
hmmpanther:PTHR21650hmmpanther:PTHR21650:SF4HOGENOM:HOG000083573InterPro:IPR019144
KEGG:ath:AT1G60995OMA:LNTRNPGPfam:PF09746PhylomeDB:Q8GWG6
Proteomes:UP000006548RefSeq:NP_001077749.1STRING:3702.AT1G60995.1TAIR:AT1G60995
TMHMM:TMhelixUniGene:At.23867UniProt:Q8GWG6
Coordinates (TAIR10) chr1:-:22465768..22470575
Molecular Weight (calculated) 71732.90 Da
IEP (calculated) 6.55
GRAVY (calculated) -0.10
Length 623 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPEQTFIRV QERFSQILTP RIRGFLEYTY LFVAITLFCI LVVMHANYVQ QPGCSSELTG VELAEAELMQ IKITSAGLWS RNDESTAADV PRVVAATDSL
101: EVSKTDQESS TSEENTDDTF VKIDKEEPRS SFSVSAKENV RAAILRFLKK CYRRISFVLQ HTARILRGVR KIWNIIGIPL NLDVPKLLHV LYMDKVNYYA
201: VQWLESKTQE FEPTYLYTME KGYFLLPDEA KSRHNIRTAN VSISARHPCF GNRWQQLLIN RVVGYDTIIM NSLQNSAGQG YLYNYQTREF YNLSYSQELP
301: DGSAHFGDYL VTKCGVLMMS LFVFFTTTMS VSFTLRETQT RMLKFTVQLQ HHAQHRLPTF QLIFVHVIES LVFVPIMIGI LFFLFEFYDD QLLAFMVLVL
401: VWLCELFTLI SVRTPISMKF FPRFFLLYFL VFHIYFFSYA YGFSYLALMT TAAFMQHLIL YFWNRFEVPA LQRFLQSRQS HLQQHPDFHI TSSTILASTL
501: HITRLNRTTR NRTPSGPNHT TPNQNTETRS FTADGGGVGN PAQYQEQQEE NEANTVPAEP NPQQAGAMSS FSSMLLWILG GASSEGLNSF LSMFRDVRDE
601: DEAQVFADTS PPQNPHHDPL SVD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)