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AT2G28390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:20374526 (2010): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SAND family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SAND family protein; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar fusion protein MON1 (InterPro:IPR004353); Has 753 Blast hits to 594 proteins in 226 species: Archae - 6; Bacteria - 38; Metazoa - 289; Fungi - 213; Plants - 47; Viruses - 3; Other Eukaryotes - 157 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR29eggNOG:KOG0997EMBL:AC006283EMBL:AK118037
EMBL:AK175575EMBL:AK175699EMBL:AK176064EMBL:AK176154
EMBL:AK221211EMBL:AY056801EMBL:AY133524EMBL:CP002685
EnsemblPlants:AT2G28390EnsemblPlants:AT2G28390.1entrez:817387GeneID:817387
GO:GO:0016192Gramene:AT2G28390.1hmmpanther:PTHR13027hmmpanther:PTHR13027:SF7
InterPro:IPR004353KEGG:ath:AT2G28390OMA:DEEWRSQPANTHER:PTHR13027
Pfam:PF03164PhylomeDB:Q9SKN1PIR:C84684PRINTS:PR01546
Proteomes:UP000006548RefSeq:NP_029426.1STRING:3702.AT2G28390.1TAIR:AT2G28390
UniGene:At.21444UniGene:At.28217UniProt:Q9SKN1
Coordinates (TAIR10) chr2:-:12139836..12143375
Molecular Weight (calculated) 66927.10 Da
IEP (calculated) 4.99
GRAVY (calculated) -0.39
Length 607 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSDSRSSP SSSDTEFADP NPSSDPETNS ERVQSQLESM NLSQPSEVSD GSHTEFSGGG DDNDDEVASA NGNEGGVSNG GLLREGVAGT SGGEVLLRAE
101: NPVEMEAGEE PPSPTSSGYD GERGSSGGAT STYKADDGSE DEIREANVDG DTASQHEAAW LPGKRHVDED DASTSWRKRK KHFFILSNSG KPIYSRYGDE
201: HKLAGFSATL QAIISFVENG GDRVNLVKAG NHQVVFLVKG PIYLVCISCT DETYEYLRGQ LDLLYGQMIL ILTKSIDRCF EKNAKFDMTP LLGGTDAVFS
301: SLVHSFSWNP ATFLHAYTCL PLPYALRQAT GTILQEVCAS GVLFSLLMCR HKVVSLAGAQ KASLHPDDLL LLSNFVMSSE SFRTSESFSP ICLPRYNAQA
401: FLHAYVHFFD DDTYVILLTT RSDAFHHLKD CRVRLEAVLL KSNILSVVQR SIAEGGMRVE DVPIDRRRRS STTNQEQDSP GPDISVGTGG PFGLWHFMYR
501: SIYLDQYISS EFSPPVTSHR QQKSLYRAYQ KLYASMHVKG LGPHKTQYRR DENYTLLCWV TPDFELYAAF DPLADKAMAI KICNQVCQRV KDVENEVFLQ
601: GASPFSW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)