suba logo
AT3G42050.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 0.500
vacuole 0.500
ASURE: golgi,vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23323832 (2013): plasma membrane
  • PMID:22923678 (2012): plant-type vacuole
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): plant-type vacuole
  • PMID:15574830 (2004): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : vacuolar ATP synthase subunit H family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
vacuolar ATP synthase subunit H family protein; FUNCTIONS IN: binding, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuolar membrane, chloroplast, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1 complex, subunit H (InterPro:IPR004908), ATPase, V1 complex, subunit H, C-terminal (InterPro:IPR011987), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 505 Blast hits to 479 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 202; Fungi - 135; Plants - 70; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
Protein Annotations
BioGrid:8496DNASU:823170eggNOG:COG5231eggNOG:KOG2759
EMBL:AL356013EMBL:AY091685EMBL:CP002686EnsemblPlants:AT3G42050
EnsemblPlants:AT3G42050.1entrez:823170Gene3D:1.25.10.10Gene3D:1.25.40.150
GeneID:823170Genevisible:Q9LX65GO:GO:0000221GO:GO:0000325
GO:GO:0005773GO:GO:0005774GO:GO:0005794GO:GO:0005886
GO:GO:0009507GO:GO:0015991GO:GO:0046961Gramene:AT3G42050.1
HOGENOM:HOG000012406InParanoid:Q9LX65InterPro:IPR004908InterPro:IPR011987
InterPro:IPR011989InterPro:IPR016024KEGG:ath:AT3G42050KO:K02144
OMA:DTLQENHPaxDb:Q9LX65Pfam:PF03224Pfam:PF11698
Pfam:Q9LX65PhylomeDB:Q9LX65PIR:T48960PIRSF:PIRSF032184
PRIDE:Q9LX65PRO:PR:Q9LX65ProteinModelPortal:Q9LX65Proteomes:UP000006548
Reactome:R-ATH-77387Reactome:R-ATH-917977RefSeq:NP_189791.1SMR:Q9LX65
STRING:3702.AT3G42050.1SUPFAM:SSF48371SwissPalm:Q9LX65TAIR:AT3G42050
TCDB:3.A.2.2.5UniGene:At.19846UniProt:Q9LX65
Coordinates (TAIR10) chr3:-:14228846..14232228
Molecular Weight (calculated) 50287.20 Da
IEP (calculated) 7.04
GRAVY (calculated) -0.06
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQAELSIEQ VLKRDIPWET YMNTKLVSAK GLQLLRRYDK KPESARAQLL DEDGPAYVHL FVSILRDIFK EETVEYVLAL IYEMLSANPT RARLFHDESL
101: ANEDTYEPFL RLLWKGNWFI QEKSCKILAW IISARPKAGN AVIGNGIDDV LKGLVEWLCA QLKQPSHPTR GVPIAISCLS SLLKEPVVRS SFVQADGVKL
201: LVPLISPAST QQSIQLLYET CLCIWLLSYY EPAIEYLATS RTMQRLTEVV KHSTKEKVVR VVILTFRNLL PKGTFGAQMV DLGLPHIIHS LKTQAWSDED
301: LLDALNQLEE GLKDKIKKLS SFDKYKQEVL LGHLDWNPMH KETNFWRENV TCFEENDFQI LRVLLTILDT SSDPRSLAVA CFDISQFIQY HAAGRVIVAD
401: LKAKERVMKL INHENAEVTK NAILCIQRLL LGAKYASFLQ A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)