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AT3G13930.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27177187 (2016): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24727099 (2014): mitochondrion
  • PMID:24124904 (2013): plastid
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23444301 (2013): mitochondrion
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22968828 (2012): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22540835 (2012): mitochondrion
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21433285 (2011): plasma membrane
  • PMID:21311031 (2011): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:15276431 (2004): mitochondrion
  • PMID:15028209 (2004): plastid
  • PMID:14764908 (2004): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Dihydrolipoamide acetyltransferase, long form protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dihydrolipoamide acetyltransferase, long form protein; FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, copper ion binding; INVOLVED IN: pyruvate metabolic process, metabolic process; LOCATED IN: mitochondrion, chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide acetyltransferase, long form (InterPro:IPR006257), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Dihydrolipoamide acetyltransferase, long form protein (TAIR:AT1G54220.2); Has 21425 Blast hits to 19790 proteins in 2331 species: Archae - 106; Bacteria - 12026; Metazoa - 730; Fungi - 474; Plants - 369; Viruses - 0; Other Eukaryotes - 7720 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G13930-MONOMEREC:2.3.1.12eggNOG:COG0508eggNOG:KOG0557
EMBL:AB019229EMBL:AF367302EMBL:AY091691EMBL:AY092968
EMBL:BT000444EMBL:BT000702EMBL:BT001223EMBL:CP002686
EnsemblPlants:AT3G13930EnsemblPlants:AT3G13930.1entrez:820606Gene3D:3.30.559.10
Gene3D:4.10.320.10GeneID:820606Genevisible:Q8RWN9GO:GO:0004742
GO:GO:0005507GO:GO:0005739GO:GO:0005759GO:GO:0006096
GO:GO:0009507GO:GO:0009941GO:GO:0045254Gramene:AT3G13930.1
gramene_pathway:2.3.1.12gramene_pathway:PYRUVDEHYD-PWYhmmpanther:PTHR23151hmmpanther:PTHR23151:SF59
HOGENOM:HOG000281566InParanoid:Q8RWN9InterPro:IPR000089InterPro:IPR001078
InterPro:IPR003016InterPro:IPR004167InterPro:IPR006257InterPro:IPR011053
InterPro:IPR023213iPTMnet:Q8RWN9KEGG:00010+2.3.1.12KEGG:00020+2.3.1.12
KEGG:00620+2.3.1.12KEGG:ath:AT3G13930KO:K00627OMA:PMVEMET
PaxDb:Q8RWN9Pfam:PF00198Pfam:PF00364Pfam:PF02817
Pfam:Q8RWN9Pfscan:PS50968PhylomeDB:Q8RWN9PRIDE:Q8RWN9
PRO:PR:Q8RWN9PROSITE:PS00189PROSITE:PS50968ProteinModelPortal:Q8RWN9
Proteomes:UP000006548Reactome:R-ATH-70268RefSeq:NP_566470.1scanprosite:PS00189
SMR:Q8RWN9STRING:3702.AT3G13930.1SUPFAM:SSF47005SUPFAM:SSF51230
SUPFAM:SSF52777TAIR:AT3G13930TIGRfam:TIGR01349TIGRFAMs:TIGR01349
UniGene:At.21338UniProt:Q8RWN9
Coordinates (TAIR10) chr3:+:4596240..4600143
Molecular Weight (calculated) 58470.80 Da
IEP (calculated) 7.75
GRAVY (calculated) -0.34
Length 539 amino acids
Sequence (TAIR10)
(BLAST)
001: MASRIINHSK KLKHVSALLR RDHAVAVRCF SNSTHPSLVG REDIFKARLN YSSVERISKC GTGNVTMLSG ISTTSTKLSS PMAGPKLFKE FISSQMRSVR
101: GFSSSSDLPP HQEIGMPSLS PTMTEGNIAR WLKKEGDKVA PGEVLCEVET DKATVEMECM EEGFLAKIVK EEGAKEIQVG EVIAITVEDE DDIQKFKDYT
201: PSSDTGPAAP EAKPAPSLPK EEKVEKPASA PEAKISKPSS APSEDRIFAS PLARKLAEDN NVPLSSIKGT GPEGRIVKAD VEDFLASGSK ETTAKPSKQV
301: DSKVPALDYV DIPHTQIRKV TASRLAFSKQ TIPHYYLTVD TCVDKMMGLR SQLNSFQEAS GGKRISVNDL VIKAAALALR KVPQCNSSWT DEYIRQFKNV
401: NINVAVQTEN GLYVPVVKDA DKKGLSTIGE EVRFLAQKAK ENSLKPEDYE GGTFTVSNLG GPFGIKQFCA VINPPQAAIL AIGSAEKRVV PGTGPDQYNV
501: ASYMSVTLSC DHRVIDGAIG AEWLKAFKGY IETPESMLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)