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AT3G15020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Lactate/malate dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Lactate/malate dehydrogenase family protein; FUNCTIONS IN: malate dehydrogenase activity, copper ion binding; INVOLVED IN: defense response to bacterium; LOCATED IN: mitochondrion, apoplast, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT1G53240.1); Has 17183 Blast hits to 17180 proteins in 5309 species: Archae - 237; Bacteria - 12010; Metazoa - 1188; Fungi - 539; Plants - 657; Viruses - 0; Other Eukaryotes - 2552 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2283-MONOMERBioGrid:6065BRENDA:1.1.1.37EC:1.1.1.37
eggNOG:COG0039eggNOG:KOG1494EMBL:AP000370EMBL:AY045592
EMBL:AY093788EMBL:CP002686EnsemblPlants:AT3G15020EnsemblPlants:AT3G15020.1
entrez:820731ExpressionAtlas:Q9LKA3Gene3D:3.40.50.720Gene3D:3.90.110.10
GeneID:820731Genevisible:Q9LKA3GO:GO:0005507GO:GO:0005739
GO:GO:0005759GO:GO:0005975GO:GO:0006099GO:GO:0006108
GO:GO:0016020GO:GO:0030060GO:GO:0042742GO:GO:0048046
gramene_pathway:1.1.1.37gramene_pathway:GLYOXYLATE-BYPASSgramene_pathway:PWY-5690gramene_pathway:PWYQT-4481
gramene_plant_reactome:1119533gramene_plant_reactome:6875741hmmpanther:PTHR11540HOGENOM:HOG000213792
InParanoid:Q9LKA3InterPro:IPR001236InterPro:IPR001252InterPro:IPR001557
InterPro:IPR010097InterPro:IPR015955InterPro:IPR016040InterPro:IPR022383
iPTMnet:Q9LKA3KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37
KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37KEGG:00720+1.1.1.37
OMA:PHALVNVPANTHER:PTHR11540PaxDb:Q9LKA3Pfam:PF00056
Pfam:PF02866Pfam:Q9LKA3PhylomeDB:Q9LKA3PIRSF:PIRSF000102
PRIDE:Q9LKA3PRO:PR:Q9LKA3PROSITE:PS00068ProteinModelPortal:Q9LKA3
Proteomes:UP000006548Reactome:R-ATH-70263Reactome:R-ATH-71403RefSeq:NP_188120.1
scanprosite:PS00068SMR:Q9LKA3STRING:3702.AT3G15020.1SUPFAM:SSF51735
SUPFAM:SSF56327TAIR:AT3G15020tair10-symbols:mMDH2TIGRfam:TIGR01772
TIGRFAMs:TIGR01772UniGene:At.6661UniGene:At.75599UniProt:Q9LKA3
Coordinates (TAIR10) chr3:+:5056139..5057941
Molecular Weight (calculated) 35877.50 Da
IEP (calculated) 8.44
GRAVY (calculated) 0.13
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MFRSMIVRSA SPVKQGLLRR GFASESVPDR KVVILGAAGG IGQPLSLLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS QVSGYMGDDD LGKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLS IAIAKYCPQA LVNMISNPVN STVPIAAEIF KKAGTYDEKK LFGVTTLDVV RARTFYAGKS DVNVAEVNVP
201: VVGGHAGITI LPLFSQASPQ ANLSDDLIRA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPNVVEC SFVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKAELKS SIEKGIKFAN Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)