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AT2G38510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.914
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G58340.1); Has 11945 Blast hits to 11897 proteins in 2040 species: Archae - 292; Bacteria - 8615; Metazoa - 143; Fungi - 328; Plants - 1321; Viruses - 0; Other Eukaryotes - 1246 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AC005499EMBL:CP002685
EMBL:DQ056572EnsemblPlants:AT2G38510EnsemblPlants:AT2G38510.1entrez:818433
GeneID:818433Genevisible:Q9ZVH5GO:GO:0015238GO:GO:0015297
GO:GO:0016021Gramene:AT2G38510.1hmmpanther:PTHR11206hmmpanther:PTHR11206:SF124
HOGENOM:HOG000177026InterPro:IPR002528KEGG:ath:AT2G38510KO:K03327
OMA:RSIISMWPaxDb:Q9ZVH5Pfam:PF01554PhylomeDB:Q9ZVH5
PIR:H84805ProteinModelPortal:Q9ZVH5Proteomes:UP000006548Reactome:R-ATH-425366
RefSeq:NP_181385.1SMR:Q9ZVH5STRING:3702.AT2G38510.1TAIR:AT2G38510
TIGRfam:TIGR00797TIGRFAMs:TIGR00797TMHMM:TMhelixUniGene:At.53066
UniProt:Q9ZVH5
Coordinates (TAIR10) chr2:+:16123985..16125445
Molecular Weight (calculated) 52537.20 Da
IEP (calculated) 7.40
GRAVY (calculated) 0.65
Length 486 amino acids
Sequence (TAIR10)
(BLAST)
001: MQVGEEMASL TKIACPIVMT SLLIFSRSII SMWFLSHLGK VELAGGALAM GFGNITGVSV LKGLSVGMDP ICGQAFGAKR WTVLSHTFQK MFCLLIVVSV
101: PIAVTWLNIE PIFLRLGQDP DITKVAKTYM LFFVPELLAQ AMLHPLRTFL RTQGLTSPLT ISAIVSILLH PLFNYVFVVR MRLGVKGVAI AMAFNTMNID
201: VGLLVYTCFS DSLIKPWEGL ALRSLFRGWW PLLSLAAPSA ISVCLEYWWY EIMLFLCGLL GNPKASVAAM GILIQTTGIL YVVPFAISSA IATRVGHALG
301: GGQPTRAQCT TVIGLILAVA YGLAAAVFVT ALRSVWGKMF TDEPEILGLI SAALPILGLC EIGNSPQTAA CGVLTGTARP KDGARVNLCA FYIVGLPVAV
401: TTTFGFKVGF RGLWFGLLSA QMTCLVMMLY TLIRTDWSHQ VKRAEELTSA AADKSHSEDE TVHAEVQDDD DVSSNDLEIG LLQNTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)