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AT1G48870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: protein phosphatase type 2A regulator activity, signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: protein phosphatase type 2A complex, heterotrimeric G-protein complex; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G64610.2); Has 34005 Blast hits to 22076 proteins in 685 species: Archae - 42; Bacteria - 5652; Metazoa - 12986; Fungi - 7325; Plants - 3866; Viruses - 0; Other Eukaryotes - 4134 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQPJeggNOG:KOG0283EMBL:AC084414EMBL:CP002684
EMBL:DQ446345EnsemblPlants:AT1G48870EnsemblPlants:AT1G48870.1entrez:841309
Gene3D:2.130.10.10GeneID:841309GO:GO:0000159GO:GO:0008601
Gramene:AT1G48870.1hmmpanther:PTHR14221hmmpanther:PTHR14221:SF8HOGENOM:HOG000239143
InterPro:IPR000009InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
InterPro:IPR020472KEGG:ath:AT1G48870OMA:CCVREENPfam:PF00400
Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9FVP7PIR:E96526
PRINTS:PR00320PRINTS:PR00600PROSITE:PS50082PROSITE:PS50294
Proteomes:UP000006548RefSeq:NP_175318.1SMART:SM00320SMR:Q9FVP7
STRING:3702.AT1G48870.1SUPFAM:SSF50978TAIR:AT1G48870UniGene:At.52083
UniProt:Q9FVP7
Coordinates (TAIR10) chr1:-:18072325..18074457
Molecular Weight (calculated) 66419.00 Da
IEP (calculated) 5.47
GRAVY (calculated) -0.41
Length 593 amino acids
Sequence (TAIR10)
(BLAST)
001: MMSVGRSEVV VDDLFFDSSD VLSIGEQVVV EEEEVEEAEF QVWSGEPISV EERRVRFLKK MGLLEERCLE RMVSDYSDEV TSSSSDSSLC DSGLQCCVRE
101: ENYGSTTSIS DEELEGVDDD DDDSEEISSN ASTSPSRSSS KKSAKKWLFN CFSAGVKDKD FKYKSSEETM SKVKVKTNKK SHVELSAAYM VQKINGHKGK
201: IWTLKFSPDG KYLATGGEDG VVKIWRITLS DSLLASFLRQ QEPINQQAAL VLFPQKAFHI EETPFQELYG HTGDVLDLAW SDSNLLLSAS KDKTVRLWRT
301: GCDQCLHVFH HNNYVTCVEF NPVNKNNFAS GSIDGKARIW GLSEERVVAW TDVRDSISAI SYQPNGNGFV VGCITGNCRF YQILDNDVIM DEQILIRGRN
401: RITAVEFCPG SSEKILVSSE DSKVRIFDKT QMIHKFKAPS NFGRQSSASF VSSTGKHILS VRRGVGVYLW NNDAFPSRKG AKSSRSFEYF HSPGVSAVAA
501: WTQPETKVSK VAGDDEESRR VMRKIQSSGR LSRSCRVTAT WPEEKLLMNV GSYDSNLPVG EFDLAEAWRL VIVTVSLDGM IRTFHNYGLP RTF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)