AT1G67680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.544 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SRP72 RNA-binding domain | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SRP72 RNA-binding domain; FUNCTIONS IN: 7S RNA binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP72 subunit, RNA-binding (InterPro:IPR013699); BEST Arabidopsis thaliana protein match is: SRP72 RNA-binding domain (TAIR:AT1G67650.1); Has 655 Blast hits to 637 proteins in 232 species: Archae - 21; Bacteria - 65; Metazoa - 237; Fungi - 154; Plants - 42; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:25365962..25368464 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73073.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.28 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||
| Length | 664 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPKSKEKSK TSNSQPPPAI EDLFTSLHQH IKDTKYEEAV KVADQVLSIV PTDEDAIRCK VVALIKDDKF DDYLIKDVKI NGALSVINSF QKLPIDLGFH 101: KAYCLYRVNK LDEALVCLKG LERDTDTLVL EAQILYRLGK ADACVDVYQK LTKSQIETLE VNLVAGLISA GKASQVQKTL ESLKIKPTSS FELAYNTACS 201: LIENNNYADA EQLLLTARRI GQETLNDDDI ALTDEEIEIE LAPIAVQLAY VQQILGQTQE STSSYVDFIK RNLADEPSLA VAVNNLVALK GFKDISDGLR 301: KFDLLKDKDS QTFQLSQALD AKLSQKHKEA IYANRVLLLL HANKMDQARE LCAALPGMFP ESIIPTLLQA AVLVRENKAA KAEELLGQCA EKFPEKSKLV 401: LLARAQIAAS ASHPHVAAES LSKIPDIQHL PATVATIVAL KERAGDNDGA AAVLDSAIKW WSNSMTESSK LRVLMPEAAA FKLRHGQEEE ASRLYEEIVK 501: NHNSTDALVG LVTTLARVNV EKAESYEKQL KPLPGLKAVD VDKLEKTYGA KPIEGAAASS SQEEVKKEKA KRKRKRKPKY PKGFDPANPG PPPDPERWLP 601: RRERSSYKPK RKDKRAAQIR GSQGAVTKDK QEAAPSTSKS NQVASSKGNA PAPSSKASKK KSRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)