AT3G57890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tubulin binding cofactor C domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tubulin binding cofactor C domain-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CARP motif (InterPro:IPR006599), C-CAP/cofactor C-like domain (InterPro:IPR017901), Tubulin binding cofactor C (InterPro:IPR012945); BEST Arabidopsis thaliana protein match is: C-CAP/cofactor C-like domain-containing protein (TAIR:AT2G42230.2); Has 385 Blast hits to 385 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21438271..21441695 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62782.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.25 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||
| Length | 573 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTEEQDLIDQ SPPPSAPDPE PNSSTNPNSV IHPRRVSFEH GLLPIQKLVF TDPIQTLAPV KQKLADAASN NRVGSAAIAD VLQISGDHAR LVLETLGSVL 101: HSESDPLVRA KPEEVDSVGA DLRDLILFLY IQSYKKLLPR THKDSAAVAD VWPSTSAFDG YLSALSPIQL VRSNSRRFMP SQADDEAHQL SYLQKHLANI 201: ISLLAEPVEG EGDESLVFSM EAFEHLRFLV QFGDKGSDVS PLSQATPFFA NSDPDMPAVP VPASQVHDWL LQNIASALES ITERISGKEN GPSNDQDDAM 301: SDVCAAPNKV APSTRGPCLI EGVSKTSLVK QASDLRGRSV KVVNCHDSVI YLLAPLRYAT VHGCSDTTIV LGAVGKAIKV EHCERVHVIV AAKRVCIANC 401: RECVFFLGVN QRPLIVGDNH KLQVAPYNTF YSHLEEHMRE VGLEPTINKW DKPLALGAVD PHDSLSHPAG VADAQAESAA SVDPDQFVNF LIPNWFSGAE 501: LGSTKDNPFP LPDAYMAAQQ RNLKNFEETR RSLKEAPLEE NRKRELSSAL HVYFKDWLYA SGNIRQLYCL QGD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)