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AT2G25910.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.958
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein; FUNCTIONS IN: 3'-5' exonuclease activity, RNA binding, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25920.1); Has 1067 Blast hits to 1067 proteins in 347 species: Archae - 0; Bacteria - 413; Metazoa - 196; Fungi - 59; Plants - 125; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111GM1eggNOG:KOG2405EMBL:AC005395EMBL:AF361606
EMBL:AY074840EMBL:AY086659EMBL:CP002685EnsemblPlants:AT2G25910
EnsemblPlants:AT2G25910.1entrez:817132ExpressionAtlas:O82306Gene3D:3.30.1370.10
Gene3D:3.30.420.10GeneID:817132GO:GO:0003723GO:GO:0008408
Gramene:AT2G25910.1hmmpanther:PTHR12124hmmpanther:PTHR12124:SF45HOGENOM:HOG000237972
IntAct:O82306InterPro:IPR002562InterPro:IPR004087InterPro:IPR004088
InterPro:IPR012337Pfam:PF00013Pfam:PF01612Pfscan:PS50084
PhylomeDB:O82306PIR:C84654PROSITE:PS50084Proteomes:UP000006548
RefSeq:NP_565612.1SMART:SM00322SMART:SM00474SMR:O82306
STRING:3702.AT2G25910.2SUPFAM:SSF53098SUPFAM:SSF54791TAIR:AT2G25910
UniGene:At.13054UniProt:O82306
Coordinates (TAIR10) chr2:-:11049379..11051997
Molecular Weight (calculated) 38389.80 Da
IEP (calculated) 5.49
GRAVY (calculated) -0.12
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSPTQLA HVPIPPEPGG RSPTQEANEP PVPIYIVTDP FQLPADFLNP SPEKKLVIGF DCEGVDLCRH GKLCIMQIAF SNAIYLVDVI EGGEVIMKAC
101: KPALESNYIT KVIHDCKRDS EALYFQFGIR LHNVVDTQIA YSLIEEQEGR RRPLDDYISF VSLLADPRYC GISYEEKEEV RVLMRQDPKF WTYRPMTELM
201: IRAAADDVRF LLYLYHKMMG KLNQRSLWHL AVRGALYCRC LCCMNDADFA DWPTVPPIPD NLKSEDQCLE EEILSVLDVP PGKMGRVIGR KGASILAIKE
301: ACNAEILIGG AKGPPDKIFV IGPVREVRKA EAILRGRMID Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)