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AT5G12210.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB geranylgeranyl transferase beta subunit 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB geranylgeranyl transferase beta subunit 1 (RGTB1); FUNCTIONS IN: catalytic activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 2 (TAIR:AT3G12070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G12210-MONOMEReggNOG:COG5029eggNOG:KOG0366EMBL:AK227802
EMBL:BT004816EMBL:BT004818EMBL:CP002688EnsemblPlants:AT5G12210
EnsemblPlants:AT5G12210.1entrez:831094ExpressionAtlas:Q84J75Gene3D:1.50.10.20
GeneID:831094GO:GO:0004663GO:GO:0005829GO:GO:0005968
GO:GO:0018344Gramene:AT5G12210.1hmmpanther:PTHR11774hmmpanther:PTHR11774:SF11
HOGENOM:HOG000180334InterPro:IPR001330InterPro:IPR008930InterPro:IPR026873
KEGG:ath:AT5G12210KO:K05956OMA:DEDVCYSPANTHER:PTHR11774:SF11
Pfam:PF00432PhylomeDB:Q84J75Proteomes:UP000006548RefSeq:NP_568259.1
SMR:Q84J75STRING:3702.AT5G12210.1SUPFAM:SSF48239TAIR:AT5G12210
tair10-symbols:AtRGTB1tair10-symbols:RGTB1UniGene:At.46789UniProt:Q84J75
Coordinates (TAIR10) chr5:+:3947254..3949595
Molecular Weight (calculated) 35497.90 Da
IEP (calculated) 5.35
GRAVY (calculated) 0.13
Length 321 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSTSSSQMV QLVADKHVRY ILMAEKKKES FESVVMDHLR MNGAYWGLTT LDLLDKLGCV SEEEVISWLM TCQHESGGFA GNTGHDPHIL YTLSAVQILA
101: LFDKINILDI GKVSSYVAKL QNEDGSFSGD MWGEIDTRFS YIAICCLSIL KCLDKINVEK AVKYIVSCKN LDGGFGCTPG AESHAGQIFC CVGALAITGS
201: LHHVDKDSLG WWLCERQLKA GGLNGRPEKL ADVCYSWWVL SSLIMIDRVH WIDKAKLVKF ILDCQDLDNG GISDRPEDAV DIFHTYFGVA GLSLLEYPGV
301: KVIDPAYALP VDVVNRIIFT K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)