AT5G54780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.977 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G27100.2); Has 4120 Blast hits to 4004 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 2315; Fungi - 731; Plants - 615; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:22248696..22251692 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49409.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.13 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||
| Length | 432 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWGAAAEPAD SYYLIRPECT DVPNTKFKIK PGKTLSVRKW QAAFTTEGFL DIGKTLSRIQ RGGIHPSIRG EVWEFLLGCY DPKSTFEERE QIRQRRRLQY 101: ASWKEECKQM FPVIGSGGFI TAPVITNKGE PIYDPIVLQE TNLGANGSDF FKDLASRGPL DQKVIQWLLT LHQIGLDVNR TDRTLVFYEK KENLSKLWDI 201: LALYAWIDND VGYCQGMSDL CSPMIMLLED EADAFWCFER LMRRLRGNFR DTGRSVGVEA QLTHLASITQ IIDPKLHHHL EKLGGGDYLF AIRMIMVQFR 301: REFSFCDSLY LWEMMWALEY DPEMYSLYEE PQFEGERIEG SSKGKPKSIN QCGKYERENM KNGGKSAEGP LPISVFLVAS VLKDKSSKLM TEARGLDDVV 401: KILNDITGNL DAKKACTGAM KLHKKYLKKA KK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)